Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 29 718
95 % 14 29 883 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 14 29 914
70 % 14 29 944
50 % 249 281 50
40 % 249 282 60
30 % 1744 1997 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 29 713
95 % 14 29 878 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 29 909
70 % 14 29 938
50 % 249 281 47
40 % 249 282 58
30 % 249 282 77
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 27 797
95 % 14 29 877 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 29 908
70 % 14 29 937
50 % 14 29 986
40 % 248 281 64
30 % 248 281 79
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1518
95 % 14 17 1347 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 17 1370
70 % 243 254 27
50 % 243 255 72
40 % 243 255 93
30 % 512 560 10
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1481
95 % 14 19 1194 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 19 1215
70 % 14 19 1250
50 % 14 19 1309
40 % 249 281 63
30 % 249 282 76
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31513
95 % 14 19 1207 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 19 1229
70 % 14 19 1268
50 % 14 19 1324
40 % 249 271 73
30 % 249 271 85
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 29 714
95 % 14 29 876 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 29 907
70 % 14 29 936
50 % 249 282 46
40 % 1000 1149 3
30 % 1745 1997 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 29 716
95 % 14 29 880 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 29 911
70 % 14 29 941
50 % 249 282 44
40 % 1001 1149 3
30 % 1746 1997 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 28 734
95 % 14 30 879 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 30 910
70 % 14 30 939
50 % 249 282 48
40 % 1002 1149 3
30 % 1747 1997 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 29 705
95 % 14 29 869 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 29 899
70 % 14 29 942
50 % 249 283 43
40 % 1003 1149 3
30 % 1748 1997 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 28 735
95 % 14 30 882 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 30 913
70 % 14 30 943
50 % 249 282 49
40 % 249 282 65
30 % 1749 1997 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 26 672
95 % 14 30 650 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 30 675
70 % 14 30 718
50 % 249 282 41
40 % 249 282 55
30 % 1750 1997 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 14 1674
95 % 14 16 1449 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 16 1477
70 % 14 16 1484
50 % 249 271 56
40 % 249 271 72
30 % 513 560 10
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 16 1203
95 % 14 16 1433 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 16 1462
70 % 14 16 1470
50 % 249 282 45
40 % 249 282 59
30 % 249 282 78

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
2 5LEY 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
3 5LF7 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
4 5LF1 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
5 5LF4 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
6 5LF6 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
7 5LF3 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
8 5LEX 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
9 5LEZ 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
10 5LF0 3 C, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
11 4R3O 4 D, R Proteasome subunit alpha type-7 UNP RESIDUES 2-244 9606 3.4.25.1 | Details
12 4R67 4 D, R, f, t Proteasome subunit alpha type-7 UNP RESIDUES 2-244 9606 3.4.25.1 | Details
13 3UNB 3 C, Q, e, s Proteasome subunit alpha type-7 10090 3.4.25.1 | Details
14 1IRU 4 D, R 20S proteasome 9913
15 3UNF 3 C, Q Proteasome subunit alpha type-7 10090 3.4.25.1 | Details
16 3UNE 3 C, Q, e, s Proteasome subunit alpha type-7 10090 3.4.25.1 | Details
17 3UNH 3 C, Q Proteasome subunit alpha type-7 10090 3.4.25.1 | Details
18 6AVO 6 I, N Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
19 5M32 15 Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
20 5M32 3 C Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
21 5T0G 4 J Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
22 5T0H 10 J Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
23 5T0I 10 J Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
24 5T0J 5 J Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
25 5T0C 22 AJ, BJ Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
26 5LN3 12 D Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
27 5GJQ 8 E, k Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
28 5GJR 22 E, k Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
29 5L4G 4 D, Q Proteasome subunit alpha type-7 9606 3.4.25.1 | Details
30 5A0Q 4 D, R PROTEASOME SUBUNIT ALPHA TYPE-7 9606 3.4.25.1 | Details