Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 48 430
95 % 14 48 551 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 48 578
70 % 14 48 619
50 % 254 315 57
40 % 254 316 74
30 % 1779 2236 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 432
95 % 14 47 553 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 581
70 % 14 47 621
50 % 254 311 60
40 % 254 312 77
30 % 254 312 93
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 38 610
95 % 14 47 548 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 575
70 % 14 47 615
50 % 14 47 661
40 % 253 311 80
30 % 253 311 94
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1079
95 % 14 24 1069 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1097
70 % 248 272 29
50 % 248 273 76
40 % 248 273 99
30 % 522 606 9
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1072
95 % 14 26 998 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1025
70 % 14 26 1048
50 % 14 26 1091
40 % 254 311 79
30 % 254 312 90
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34305
95 % 14 26 1001 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1027
70 % 14 26 1046
50 % 14 26 1093
40 % 254 290 89
30 % 254 290 102
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 431
95 % 14 47 552 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 47 579
70 % 14 47 620
50 % 254 315 54
40 % 1020 1288 3
30 % 1780 2236 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 941
95 % 14 47 550 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 47 577
70 % 14 47 618
50 % 254 315 53
40 % 1021 1288 3
30 % 1781 2236 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 42 470
95 % 14 48 549 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 48 576
70 % 14 48 617
50 % 254 315 58
40 % 1022 1288 3
30 % 1782 2236 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 43 457
95 % 14 47 543 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 47 570
70 % 14 47 610
50 % 254 316 51
40 % 1023 1288 3
30 % 1783 2236 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 985
95 % 14 48 544 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 48 571
70 % 14 48 611
50 % 254 315 56
40 % 254 315 75
30 % 1784 2236 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1190
95 % 14 48 440 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 48 479
70 % 14 48 510
50 % 254 315 41
40 % 254 315 58
30 % 1785 2236 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1125
95 % 14 23 1104 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1140
70 % 14 23 1170
50 % 254 290 70
40 % 254 290 88
30 % 523 606 9
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 900
95 % 14 23 1105 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1141
70 % 14 23 1171
50 % 254 312 59
40 % 254 312 76
30 % 254 312 92

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
2 5LEY 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
3 5LF7 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
4 5LF1 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
5 5LF4 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
6 5LF6 13 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
7 5LF3 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
8 5LEX 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
9 5LEZ 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
10 5LF0 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
11 4R3O 13 1, M Proteasome subunit beta type-1 UNP RESIDUES 29-241 9606 3.4.25.1 | Details
12 4R67 13 1, M, a, o Proteasome subunit beta type-1 UNP RESIDUES 29-241 9606 3.4.25.1 | Details
13 3UNB 12 2, L, Z, n Proteasome subunit beta type-1 10090 3.4.25.1 | Details
14 1IRU 13 1, M 20S proteasome 9913
15 3UNF 12 L, Z Proteasome subunit beta type-1 10090 3.4.25.1 | Details
16 3UNE 12 2, L, Z, n Proteasome subunit beta type-1 10090 3.4.25.1 | Details
17 3UNH 12 L, Z Proteasome subunit beta type-1 10090 3.4.25.1 | Details
18 6AVO 11 S, X Proteasome subunit beta type-1 9606 3.4.25.1 | Details
19 5VFP 13 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
20 5VFQ 13 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
21 5VFR 24 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
22 5VFS 13 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
23 5VFT 30 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
24 5VFU 30 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
25 5VFO 13 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
26 5A0Q 13 M, a PROTEASOME SUBUNIT BETA TYPE-1 9606 3.4.25.1 | Details