Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 511
95 % 14 40 637 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 40 665
70 % 14 40 717
50 % 250 293 64
40 % 250 294 78
30 % 1751 2081 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 506
95 % 14 40 628 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 657
70 % 14 40 706
50 % 250 293 60
40 % 250 294 76
30 % 250 294 93
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 31 783
95 % 14 40 632 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 661
70 % 14 40 712
50 % 14 40 770
40 % 249 293 82
30 % 249 293 96
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1019
95 % 14 24 1009 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1035
70 % 244 262 28
50 % 244 263 77
40 % 244 263 99
30 % 514 578 10
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1012
95 % 14 26 936 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 966
70 % 14 26 1000
50 % 14 26 1042
40 % 250 293 80
30 % 250 294 92
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32998
95 % 14 26 940 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 969
70 % 14 26 1001
50 % 14 26 1045
40 % 250 279 88
30 % 250 279 105
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 512
95 % 14 40 638 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 40 666
70 % 14 40 718
50 % 250 294 59
40 % 1004 1197 3
30 % 1752 2081 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 887
95 % 14 40 636 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 40 664
70 % 14 40 716
50 % 250 294 57
40 % 1005 1197 3
30 % 1753 2081 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 35 575
95 % 14 41 633 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 41 662
70 % 14 41 713
50 % 250 294 63
40 % 1006 1197 3
30 % 1754 2081 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 36 551
95 % 14 40 629 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 40 658
70 % 14 40 707
50 % 250 295 55
40 % 1007 1197 3
30 % 1755 2081 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 929
95 % 14 41 630 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 41 659
70 % 14 41 708
50 % 250 294 61
40 % 250 294 81
30 % 1756 2081 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 37 492
95 % 14 41 521 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 41 554
70 % 14 41 586
50 % 250 294 44
40 % 250 294 62
30 % 1757 2081 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1055
95 % 14 23 1039 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1074
70 % 14 23 1116
50 % 250 279 69
40 % 250 279 87
30 % 515 578 10
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 848
95 % 14 23 1040 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1075
70 % 14 23 1117
50 % 250 294 58
40 % 250 294 77
30 % 250 294 94

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
2 5LEY 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
3 5LF7 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
4 5LF1 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
5 5LF4 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
6 5LF6 13 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
7 5LF3 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
8 5LEX 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
9 5LEZ 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
10 5LF0 12 L, Z Proteasome subunit beta type-1 9606 3.4.25.1 | Details
11 4R3O 13 1, M Proteasome subunit beta type-1 UNP RESIDUES 29-241 9606 3.4.25.1 | Details
12 4R67 13 1, M, a, o Proteasome subunit beta type-1 UNP RESIDUES 29-241 9606 3.4.25.1 | Details
13 3UNB 12 2, L, Z, n Proteasome subunit beta type-1 10090 3.4.25.1 | Details
14 1IRU 13 1, M 20S proteasome 9913
15 3UNF 12 L, Z Proteasome subunit beta type-1 10090 3.4.25.1 | Details
16 3UNE 12 2, L, Z, n Proteasome subunit beta type-1 10090 3.4.25.1 | Details
17 3UNH 12 L, Z Proteasome subunit beta type-1 10090 3.4.25.1 | Details
18 6AVO 11 S, X Proteasome subunit beta type-1 9606 3.4.25.1 | Details
19 5VFP 13 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
20 5VFQ 13 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
21 5VFR 24 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
22 5VFS 13 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
23 5VFT 30 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
24 5VFU 30 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
25 5VFO 13 S, s Proteasome subunit beta type-1 9606 3.4.25.1 | Details
26 5A0Q 13 M, a PROTEASOME SUBUNIT BETA TYPE-1 9606 3.4.25.1 | Details