Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 48 428
95 % 14 48 547 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 48 575
70 % 14 48 617
50 % 254 315 56
40 % 254 316 74
30 % 1779 2236 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 430
95 % 14 47 549 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 578
70 % 14 47 619
50 % 254 311 59
40 % 254 312 77
30 % 254 312 91
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 38 608
95 % 14 47 544 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 572
70 % 14 47 614
50 % 14 47 657
40 % 253 311 80
30 % 253 311 93
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1073
95 % 14 24 1060 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1089
70 % 248 272 28
50 % 248 273 75
40 % 248 273 99
30 % 522 606 9
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1066
95 % 14 26 991 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1022
70 % 14 26 1042
50 % 14 26 1085
40 % 254 311 79
30 % 254 312 88
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34176
95 % 14 26 993 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1018
70 % 14 26 1040
50 % 14 26 1087
40 % 254 290 88
30 % 254 290 101
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 429
95 % 14 47 548 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 47 576
70 % 14 47 618
50 % 254 315 54
40 % 1020 1288 3
30 % 1780 2236 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 935
95 % 14 47 546 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 47 574
70 % 14 47 616
50 % 254 315 52
40 % 1021 1288 3
30 % 1781 2236 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 42 466
95 % 14 48 545 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 48 573
70 % 14 48 615
50 % 254 315 57
40 % 1022 1288 3
30 % 1782 2236 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 43 455
95 % 14 47 539 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 47 567
70 % 14 47 609
50 % 254 316 50
40 % 1023 1288 3
30 % 1783 2236 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 977
95 % 14 48 540 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 48 568
70 % 14 48 610
50 % 254 315 55
40 % 254 315 75
30 % 1784 2236 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1182
95 % 14 48 433 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 48 472
70 % 14 48 502
50 % 254 315 40
40 % 254 315 56
30 % 1785 2236 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1120
95 % 14 23 1097 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1135
70 % 14 23 1166
50 % 254 290 70
40 % 254 290 87
30 % 523 606 9
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 895
95 % 14 23 1098 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1136
70 % 14 23 1167
50 % 254 312 58
40 % 254 312 76
30 % 254 312 90

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
2 5LEY 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
3 5LF7 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
4 5LF1 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
5 5LF4 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
6 5LF6 12 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
7 5LF3 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
8 5LEX 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
9 5LEZ 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
10 5LF0 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
11 4R3O 12 L, Z Proteasome subunit beta type-5 UNP RESIDUES 60-260 9606 3.4.25.1 | Details
12 4R67 12 3, L, Z, n Proteasome subunit beta type-5 UNP RESIDUES 60-260 9606 3.4.25.1 | Details
13 3UNB 11 1, K, Y, m Proteasome subunit beta type-5 10090 3.4.25.1 | Details
14 1IRU 12 L, Z 20S proteasome 9913
15 3UNE 11 1, K, Y, m Proteasome subunit beta type-5 10090 3.4.25.1 | Details
16 5VFP 12 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
17 5VFQ 12 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
18 5VFR 23 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
19 5VFS 12 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
20 5VFT 29 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
21 5VFU 29 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
22 5VFO 12 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
23 5M32 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
24 5A0Q 12 L, Z PROTEASOME SUBUNIT BETA TYPE-5 SUBUNIT BOUND TO THE INHIBITOR ADAMANTANE-ACETYL-(6-AMINOHEXANOYL)3-(LEUCINYL)3-VINYL-(METHYL)-SULFONE (ADAAHX3L3VS) 9606 3.4.25.1 | Details