Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 519
95 % 14 40 649 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 40 676
70 % 14 40 729
50 % 254 307 56
40 % 254 308 75
30 % 1779 2179 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 514
95 % 14 40 639 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 666
70 % 14 40 719
50 % 254 304 59
40 % 254 305 77
30 % 254 305 91
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 31 802
95 % 14 40 644 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 672
70 % 14 40 725
50 % 14 40 782
40 % 253 304 80
30 % 253 304 93
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1047
95 % 14 24 1031 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1054
70 % 248 272 28
50 % 248 273 73
40 % 248 273 97
30 % 522 599 10
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1041
95 % 14 26 960 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 985
70 % 14 26 1016
50 % 14 26 1066
40 % 254 304 79
30 % 254 305 90
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33783
95 % 14 26 963 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 982
70 % 14 26 1015
50 % 14 26 1069
40 % 254 290 88
30 % 254 290 100
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 520
95 % 14 40 650 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 40 677
70 % 14 40 730
50 % 254 308 54
40 % 1020 1253 3
30 % 1780 2179 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 918
95 % 14 40 648 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 40 675
70 % 14 40 728
50 % 254 308 53
40 % 1021 1253 3
30 % 1781 2179 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 35 590
95 % 14 41 645 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 41 673
70 % 14 41 726
50 % 254 308 57
40 % 1022 1253 3
30 % 1782 2179 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 36 560
95 % 14 40 640 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 40 667
70 % 14 40 720
50 % 254 309 52
40 % 1023 1253 3
30 % 1783 2179 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 959
95 % 14 41 641 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 41 668
70 % 14 41 721
50 % 254 308 55
40 % 254 308 76
30 % 1784 2179 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 37 500
95 % 14 41 529 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 41 558
70 % 14 41 592
50 % 254 308 47
40 % 254 308 68
30 % 1785 2179 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1089
95 % 14 23 1074 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1109
70 % 14 23 1143
50 % 254 290 69
40 % 254 290 87
30 % 523 599 10
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 875
95 % 14 23 1075 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1110
70 % 14 23 1144
50 % 254 305 58
40 % 254 305 78
30 % 254 305 92

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
2 5LEY 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
3 5LF7 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
4 5LF1 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
5 5LF4 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
6 5LF6 12 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
7 5LF3 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
8 5LEX 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
9 5LEZ 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
10 5LF0 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
11 4R3O 12 L, Z Proteasome subunit beta type-5 UNP RESIDUES 60-260 9606 3.4.25.1 | Details
12 4R67 12 3, L, Z, n Proteasome subunit beta type-5 UNP RESIDUES 60-260 9606 3.4.25.1 | Details
13 3UNB 11 1, K, Y, m Proteasome subunit beta type-5 10090 3.4.25.1 | Details
14 1IRU 12 L, Z 20S proteasome 9913
15 3UNE 11 1, K, Y, m Proteasome subunit beta type-5 10090 3.4.25.1 | Details
16 5VFP 12 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
17 5VFQ 12 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
18 5VFR 23 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
19 5VFS 12 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
20 5VFT 29 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
21 5VFU 29 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
22 5VFO 12 R, r Proteasome subunit beta type-5 9606 3.4.25.1 | Details
23 5M32 11 K, Y Proteasome subunit beta type-5 9606 3.4.25.1 | Details
24 5A0Q 12 L, Z PROTEASOME SUBUNIT BETA TYPE-5 SUBUNIT BOUND TO THE INHIBITOR ADAMANTANE-ACETYL-(6-AMINOHEXANOYL)3-(LEUCINYL)3-VINYL-(METHYL)-SULFONE (ADAAHX3L3VS) 9606 3.4.25.1 | Details