Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 48 439
95 % 14 48 559 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 48 586
70 % 14 48 627
50 % 291 355 40
40 % 291 356 47
30 % 2038 2516 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 441
95 % 14 47 562 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 590
70 % 14 47 630
50 % 291 351 44
40 % 291 352 50
30 % 291 352 68
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 38 623
95 % 14 47 557 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 584
70 % 14 47 625
50 % 14 47 677
40 % 290 351 53
30 % 290 351 69
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1088
95 % 14 24 1085 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1112
70 % 285 309 23
50 % 285 310 63
40 % 285 310 82
30 % 596 683 9
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1082
95 % 14 26 1009 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1036
70 % 14 26 1062
50 % 14 26 1105
40 % 291 351 52
30 % 291 352 65
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34720
95 % 14 26 1013 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1039
70 % 14 26 1060
50 % 14 26 1107
40 % 291 330 61
30 % 291 330 75
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 440
95 % 14 47 561 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 47 588
70 % 14 47 629
50 % 291 355 38
40 % 1168 1448 2
30 % 2039 2516 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 953
95 % 14 47 560 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 47 587
70 % 14 47 628
50 % 291 355 37
40 % 1169 1448 2
30 % 2040 2516 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 42 479
95 % 14 48 558 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 48 585
70 % 14 48 626
50 % 291 355 41
40 % 1170 1448 2
30 % 2041 2516 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 43 464
95 % 14 47 552 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 47 579
70 % 14 47 620
50 % 291 356 35
40 % 1171 1448 2
30 % 2042 2516 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 995
95 % 14 48 553 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 48 580
70 % 14 48 621
50 % 291 355 39
40 % 291 355 48
30 % 2043 2516 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1204
95 % 14 48 455 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 48 491
70 % 14 48 523
50 % 291 355 31
40 % 291 355 42
30 % 2044 2516 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1136
95 % 14 23 1120 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1157
70 % 14 23 1187
50 % 291 330 47
40 % 291 330 60
30 % 597 683 9
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 24 922
95 % 24 33 737 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 24 33 771
70 % 24 33 815
50 % 291 352 42
40 % 291 352 49
30 % 291 352 67

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
2 5LEY 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
3 5LF7 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
4 5LF1 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
5 5LF4 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
6 5LF6 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
7 5LF3 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
8 5LEX 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
9 5LEZ 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
10 5LF0 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
11 4R3O 11 K, Y Proteasome subunit beta type-2 UNP RESIDUES 1-199 9606 3.4.25.1 | Details
12 4R67 11 0, K, Y, m Proteasome subunit beta type-2 UNP RESIDUES 1-199 9606 3.4.25.1 | Details
13 3UNB 10 J, X, l, z Proteasome subunit beta type-2 10090 3.4.25.1 | Details
14 1IRU 11 K, Y 20S proteasome 9913
15 3UNF 10 J, X Proteasome subunit beta type-2 10090 3.4.25.1 | Details
16 3UNE 10 J, X, l, z Proteasome subunit beta type-2 10090 3.4.25.1 | Details
17 3UNH 10 J, X Proteasome subunit beta type-2 10090 3.4.25.1 | Details
18 6MSB 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
19 6MSD 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
20 6MSE 31 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
21 6MSG 31 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
22 6MSH 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
23 6MSJ 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
24 6MSK 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
25 6EPC 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
26 6EPD 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
27 6EPE 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
28 6EPF 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
29 6AVO 12 T, V Proteasome subunit beta type-2 9606 3.4.25.1 | Details
30 5VFP 11 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
31 5VFQ 11 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
32 5VFR 22 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
33 5VFS 11 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
34 5VFT 28 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
35 5VFU 28 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
36 5VFO 11 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
37 5M32 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
38 5T0G 11 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
39 5T0H 17 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
40 5T0I 17 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
41 5T0J 12 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
42 5T0C 29 AQ, BQ Proteasome subunit beta type-2 9606 3.4.25.1 | Details
43 5LN3 5 4 Proteasome subunit beta type-2 9606 3.4.25.1 | Details
44 5GJQ 7 d, r Proteasome subunit beta type-2 9606 3.4.25.1 | Details
45 5GJR 29 d, r Proteasome subunit beta type-2 9606 3.4.25.1 | Details
46 5L4G 9 2, V Proteasome subunit beta type-2 9606 3.4.25.1 | Details
47 5A0Q 11 K, Y PROTEASOME SUBUNIT BETA TYPE-2 9606 3.4.25.1 | Details