Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 48 430
95 % 14 48 550 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 48 577
70 % 14 48 617
50 % 254 315 56
40 % 254 316 74
30 % 1779 2236 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 432
95 % 14 47 552 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 580
70 % 14 47 619
50 % 254 311 59
40 % 254 312 77
30 % 254 312 92
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 38 608
95 % 14 47 547 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 574
70 % 14 47 614
50 % 14 47 657
40 % 253 311 80
30 % 253 311 94
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1073
95 % 14 24 1063 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1093
70 % 248 272 28
50 % 248 273 75
40 % 248 273 99
30 % 522 606 9
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1066
95 % 14 26 993 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1021
70 % 14 26 1042
50 % 14 26 1086
40 % 254 311 79
30 % 254 312 89
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34237
95 % 14 26 995 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1023
70 % 14 26 1040
50 % 14 26 1088
40 % 254 290 88
30 % 254 290 101
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 431
95 % 14 47 551 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 47 578
70 % 14 47 618
50 % 254 315 54
40 % 1020 1288 3
30 % 1780 2236 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 936
95 % 14 47 549 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 47 576
70 % 14 47 616
50 % 254 315 53
40 % 1021 1288 3
30 % 1781 2236 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 42 469
95 % 14 48 548 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 48 575
70 % 14 48 615
50 % 254 315 57
40 % 1022 1288 3
30 % 1782 2236 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 43 457
95 % 14 47 542 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 47 569
70 % 14 47 609
50 % 254 316 51
40 % 1023 1288 3
30 % 1783 2236 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 979
95 % 14 48 543 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 48 570
70 % 14 48 610
50 % 254 315 55
40 % 254 315 75
30 % 1784 2236 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1187
95 % 14 48 438 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 48 478
70 % 14 48 509
50 % 254 315 41
40 % 254 315 57
30 % 1785 2236 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1120
95 % 14 23 1100 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1138
70 % 14 23 1167
50 % 254 290 70
40 % 254 290 87
30 % 523 606 9
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 896
95 % 14 23 1101 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1139
70 % 14 23 1168
50 % 254 312 58
40 % 254 312 76
30 % 254 312 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
2 5LEY 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
3 5LF7 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
4 5LF1 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
5 5LF4 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
6 5LF6 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
7 5LF3 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
8 5LEX 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
9 5LEZ 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
10 5LF0 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
11 4R3O 11 K, Y Proteasome subunit beta type-2 UNP RESIDUES 1-199 9606 3.4.25.1 | Details
12 4R67 11 0, K, Y, m Proteasome subunit beta type-2 UNP RESIDUES 1-199 9606 3.4.25.1 | Details
13 3UNB 10 J, X, l, z Proteasome subunit beta type-2 10090 3.4.25.1 | Details
14 1IRU 11 K, Y 20S proteasome 9913
15 3UNF 10 J, X Proteasome subunit beta type-2 10090 3.4.25.1 | Details
16 3UNE 10 J, X, l, z Proteasome subunit beta type-2 10090 3.4.25.1 | Details
17 3UNH 10 J, X Proteasome subunit beta type-2 10090 3.4.25.1 | Details
18 6MSB 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
19 6MSD 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
20 6MSE 31 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
21 6MSG 31 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
22 6MSH 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
23 6MSJ 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
24 6MSK 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
25 6EPC 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
26 6EPD 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
27 6EPE 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
28 6EPF 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
29 6AVO 12 T, V Proteasome subunit beta type-2 9606 3.4.25.1 | Details
30 5VFP 11 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
31 5VFQ 11 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
32 5VFR 22 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
33 5VFS 11 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
34 5VFT 28 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
35 5VFU 28 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
36 5VFO 11 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
37 5M32 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
38 5T0G 11 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
39 5T0H 17 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
40 5T0I 17 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
41 5T0J 12 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
42 5T0C 29 AQ, BQ Proteasome subunit beta type-2 9606 3.4.25.1 | Details
43 5LN3 5 4 Proteasome subunit beta type-2 9606 3.4.25.1 | Details
44 5GJQ 7 d, r Proteasome subunit beta type-2 9606 3.4.25.1 | Details
45 5GJR 29 d, r Proteasome subunit beta type-2 9606 3.4.25.1 | Details
46 5L4G 9 2, V Proteasome subunit beta type-2 9606 3.4.25.1 | Details
47 5A0Q 11 K, Y PROTEASOME SUBUNIT BETA TYPE-2 9606 3.4.25.1 | Details