Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 48 425
95 % 14 48 543 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 48 571
70 % 14 48 613
50 % 254 315 56
40 % 254 316 74
30 % 1779 2229 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 427
95 % 14 47 545 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 574
70 % 14 47 615
50 % 254 311 59
40 % 254 312 77
30 % 254 312 92
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 38 603
95 % 14 47 540 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 568
70 % 14 47 610
50 % 14 47 654
40 % 253 311 80
30 % 253 311 94
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1068
95 % 14 24 1056 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1082
70 % 248 272 28
50 % 248 273 74
40 % 248 273 98
30 % 522 599 10
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1061
95 % 14 26 986 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1015
70 % 14 26 1037
50 % 14 26 1082
40 % 254 311 79
30 % 254 312 89
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34082
95 % 14 26 988 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1011
70 % 14 26 1035
50 % 14 26 1084
40 % 254 290 88
30 % 254 290 101
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 426
95 % 14 47 544 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 47 572
70 % 14 47 614
50 % 254 315 54
40 % 1020 1281 3
30 % 1780 2229 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 931
95 % 14 47 542 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 47 570
70 % 14 47 612
50 % 254 315 52
40 % 1021 1281 3
30 % 1781 2229 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 42 462
95 % 14 48 541 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 48 569
70 % 14 48 611
50 % 254 315 57
40 % 1022 1281 3
30 % 1782 2229 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 43 452
95 % 14 47 536 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 47 564
70 % 14 47 606
50 % 254 316 50
40 % 1023 1281 3
30 % 1783 2229 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 973
95 % 14 48 537 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 48 565
70 % 14 48 607
50 % 254 315 55
40 % 254 315 75
30 % 1784 2229 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 44 412
95 % 14 48 431 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 48 471
70 % 14 48 500
50 % 254 315 40
40 % 254 315 56
30 % 1785 2229 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1115
95 % 14 23 1090 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1126
70 % 14 23 1159
50 % 254 290 69
40 % 254 290 87
30 % 523 599 10
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 891
95 % 14 23 1091 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1127
70 % 14 23 1160
50 % 254 312 58
40 % 254 312 76
30 % 254 312 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
2 5LEY 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
3 5LF7 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
4 5LF1 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
5 5LF4 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
6 5LF6 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
7 5LF3 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
8 5LEX 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
9 5LEZ 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
10 5LF0 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
11 3UNB 10 J, X, l, z Proteasome subunit beta type-2 10090 3.4.25.1 | Details
12 1IRU 11 K, Y 20S proteasome 9913
13 3UNF 10 J, X Proteasome subunit beta type-2 10090 3.4.25.1 | Details
14 3UNE 10 J, X, l, z Proteasome subunit beta type-2 10090 3.4.25.1 | Details
15 3UNH 10 J, X Proteasome subunit beta type-2 10090 3.4.25.1 | Details
16 6MSB 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
17 6MSD 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
18 6MSE 31 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
19 6MSG 31 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
20 6MSH 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
21 6MSJ 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
22 6MSK 30 Q, q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
23 6EPC 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
24 6EPD 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
25 6EPE 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
26 6EPF 11 4 Proteasome subunit beta type-2 10116 3.4.25.1 | Details
27 6AVO 12 T, V Proteasome subunit beta type-2 9606 3.4.25.1 | Details
28 5M32 10 J, X Proteasome subunit beta type-2 9606 3.4.25.1 | Details
29 5T0G 11 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
30 5T0H 17 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
31 5T0I 17 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
32 5T0J 12 Q Proteasome subunit beta type-2 9606 3.4.25.1 | Details
33 5T0C 29 AQ, BQ Proteasome subunit beta type-2 9606 3.4.25.1 | Details
34 5LN3 5 4 Proteasome subunit beta type-2 9606 3.4.25.1 | Details
35 5GJQ 7 d, r Proteasome subunit beta type-2 9606 3.4.25.1 | Details
36 5GJR 29 d, r Proteasome subunit beta type-2 9606 3.4.25.1 | Details
37 5L4G 9 2, V Proteasome subunit beta type-2 9606 3.4.25.1 | Details
38 5A0Q 11 K, Y PROTEASOME SUBUNIT BETA TYPE-2 9606 3.4.25.1 | Details