Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 48 430
95 % 14 48 550 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 48 577
70 % 14 48 617
50 % 254 315 56
40 % 254 316 74
30 % 1779 2236 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 432
95 % 14 47 552 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 580
70 % 14 47 619
50 % 254 311 59
40 % 254 312 77
30 % 254 312 92
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 38 608
95 % 14 47 547 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 574
70 % 14 47 614
50 % 14 47 657
40 % 253 311 80
30 % 253 311 94
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1073
95 % 14 24 1063 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1093
70 % 248 272 28
50 % 248 273 75
40 % 248 273 99
30 % 522 606 9
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1066
95 % 14 26 993 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1021
70 % 14 26 1042
50 % 14 26 1086
40 % 254 311 79
30 % 254 312 89
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34237
95 % 14 26 995 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1023
70 % 14 26 1040
50 % 14 26 1088
40 % 254 290 88
30 % 254 290 101
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 431
95 % 14 47 551 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 47 578
70 % 14 47 618
50 % 254 315 54
40 % 1020 1288 3
30 % 1780 2236 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 936
95 % 14 47 549 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 47 576
70 % 14 47 616
50 % 254 315 53
40 % 1021 1288 3
30 % 1781 2236 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 42 469
95 % 14 48 548 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 48 575
70 % 14 48 615
50 % 254 315 57
40 % 1022 1288 3
30 % 1782 2236 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 43 457
95 % 14 47 542 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 47 569
70 % 14 47 609
50 % 254 316 51
40 % 1023 1288 3
30 % 1783 2236 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 979
95 % 14 48 543 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 48 570
70 % 14 48 610
50 % 254 315 55
40 % 254 315 75
30 % 1784 2236 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1187
95 % 14 48 438 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 48 478
70 % 14 48 509
50 % 254 315 41
40 % 254 315 57
30 % 1785 2236 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1120
95 % 14 23 1100 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1138
70 % 14 23 1167
50 % 254 290 70
40 % 254 290 87
30 % 523 606 9
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 896
95 % 14 23 1101 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1139
70 % 14 23 1168
50 % 254 312 58
40 % 254 312 76
30 % 254 312 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
2 5LEY 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
3 5LF7 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
4 5LF1 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
5 5LF4 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
6 5LF6 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
7 5LF3 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
8 5LEX 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
9 5LEZ 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
10 5LF0 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
11 4R3O 1 A, O Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
12 4R67 1 A, O, c, q Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
13 3UNB 7 G, U, i, w Proteasome subunit alpha type-6 10090 3.4.25.1 | Details
14 1IRU 1 A, O 20S proteasome 9913
15 3UNF 7 G, U Proteasome subunit alpha type-6 10090 3.4.25.1 | Details
16 3UNE 7 G, U, i, w Proteasome subunit alpha type-6 10090 3.4.25.1 | Details
17 3UNH 7 G, U Proteasome subunit alpha type-6 10090 3.4.25.1 | Details
18 6MSB 20 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
19 6MSD 20 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
20 6MSE 21 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
21 6MSG 21 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
22 6MSH 20 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
23 6MSJ 20 G Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
24 6MSJ 34 g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
25 6MSK 20 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
26 6EPC 1 A Proteasome subunit alpha type-6 10116 3.4.25.1 | Details
27 6EPD 1 A Proteasome subunit alpha type-6 10116 3.4.25.1 | Details
28 6EPE 1 A Proteasome subunit alpha type-6 10116 3.4.25.1 | Details
29 6EPF 1 A Proteasome subunit alpha type-6 10116 3.4.25.1 | Details
30 6AVO 8 K, R Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
31 5VFP 1 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
32 5VFQ 1 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
33 5VFR 12 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
34 5VFS 1 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
35 5VFT 18 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
36 5VFU 18 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
37 5VFO 1 G, g Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
38 5M32 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
39 5T0G 1 G Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
40 5T0H 7 G Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
41 5T0I 7 G Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
42 5T0J 2 G Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
43 5T0C 19 AG, BG Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
44 5LN3 9 A Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
45 5GJQ 2 B, h Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
46 5GJR 19 B, h Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
47 5L4G 1 A, N Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
48 5A0Q 1 A, O PROTEASOME SUBUNIT ALPHA TYPE-6 9606 3.4.25.1 | Details