Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 25 818
95 % 14 29 873 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 14 29 907
70 % 14 29 933
50 % 249 281 48
40 % 249 282 56
30 % 1744 1997 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42100
95 % 14 29 878 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 29 912
70 % 14 29 940
50 % 249 281 49
40 % 249 282 57
30 % 249 282 77
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 865
95 % 14 29 879 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 29 913
70 % 14 29 941
50 % 14 29 981
40 % 248 281 61
30 % 248 281 78
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1318
95 % 14 17 1358 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 17 1382
70 % 243 254 27
50 % 243 255 70
40 % 243 255 91
30 % 512 560 13
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1316
95 % 14 19 1202 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 19 1226
70 % 14 19 1257
50 % 14 19 1319
40 % 249 281 60
30 % 249 282 76
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40925
95 % 14 19 1198 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 19 1224
70 % 14 19 1255
50 % 14 19 1317
40 % 249 271 68
30 % 249 271 84
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 25 822
95 % 14 29 876 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 29 910
70 % 14 29 938
50 % 249 282 45
40 % 1000 1149 3
30 % 1745 1997 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 25 816
95 % 14 29 871 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 29 905
70 % 14 29 930
50 % 249 282 44
40 % 1001 1149 3
30 % 1746 1997 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 860
95 % 14 30 872 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 30 906
70 % 14 30 932
50 % 249 282 47
40 % 1002 1149 3
30 % 1747 1997 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39558
95 % 14 29 875 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 29 909
70 % 14 29 936
50 % 249 283 42
40 % 1003 1149 3
30 % 1748 1997 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 857
95 % 14 30 870 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 30 904
70 % 14 30 929
50 % 249 282 46
40 % 249 282 59
30 % 1749 1997 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 26 603
95 % 14 30 654 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 30 679
70 % 14 30 720
50 % 49 66 363
40 % 49 66 379
30 % 1750 1997 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 14 1437
95 % 14 16 1433 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 16 1460
70 % 14 16 1463
50 % 249 271 54
40 % 249 271 69
30 % 513 560 13
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39907
95 % 14 16 1426 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 16 1454
70 % 14 16 1459
50 % 249 282 43
40 % 249 282 55
30 % 249 282 75

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
2 5LEY 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
3 5LF7 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
4 5LF1 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
5 5LF4 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
6 5LF6 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
7 5LF3 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
8 5LEX 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
9 5LEZ 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
10 5LF0 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
11 4R3O 1 A, O Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
12 4R67 1 A, O, c, q Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
13 3UNB 7 G, U, i, w Proteasome subunit alpha type-6 10090 3.4.25.1 | Details
14 1IRU 1 A, O 20S proteasome 9913
15 3UNF 7 G, U Proteasome subunit alpha type-6 10090 3.4.25.1 | Details
16 3UNE 7 G, U, i, w Proteasome subunit alpha type-6 10090 3.4.25.1 | Details
17 3UNH 7 G, U Proteasome subunit alpha type-6 10090 3.4.25.1 | Details
18 6AVO 8 K, R Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
19 5M32 7 G, U Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
20 5T0G 1 G Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
21 5T0H 7 G Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
22 5T0I 7 G Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
23 5T0J 2 G Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
24 5T0C 19 AG, BG Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
25 5LN3 9 A Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
26 5GJQ 2 B, h Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
27 5GJR 19 B, h Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
28 5L4G 1 A, N Proteasome subunit alpha type-6 9606 3.4.25.1 | Details
29 5A0Q 1 A, O PROTEASOME SUBUNIT ALPHA TYPE-6 9606 3.4.25.1 | Details