Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 836
95 % 14 27 881
90 % 14 27 914
70 % 14 27 938
50 % 247 277 43
40 % 247 278 49
30 % 1730 1964 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39071
95 % 14 27 887
90 % 14 27 919
70 % 14 27 943
50 % 247 277 44
40 % 247 278 50
30 % 247 278 69
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 841
95 % 14 27 888
90 % 14 27 920
70 % 14 27 944
50 % 14 27 977
40 % 246 277 53
30 % 246 277 70
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 1303
95 % 14 16 1327
90 % 14 16 1347
70 % 241 250 25
50 % 241 251 54
40 % 241 251 67
30 % 508 550 12
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 1298
95 % 14 18 1171
90 % 14 18 1197
70 % 14 18 1238
50 % 14 18 1285
40 % 247 277 52
30 % 247 278 68
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37971
95 % 14 18 1168
90 % 14 18 1194
70 % 14 18 1236
50 % 14 18 1284
40 % 247 268 58
30 % 247 268 74
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 837
95 % 14 27 883
90 % 14 27 916
70 % 14 27 940
50 % 247 278 40
40 % 992 1129 3
30 % 1731 1964 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 834
95 % 14 27 879
90 % 14 27 912
70 % 14 27 936
50 % 247 278 39
40 % 993 1129 3
30 % 1732 1964 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 835
95 % 14 27 880
90 % 14 27 913
70 % 14 27 937
50 % 247 277 42
40 % 994 1129 3
30 % 1733 1964 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 36714
95 % 14 27 882
90 % 14 27 915
70 % 14 27 939
50 % 247 279 37
40 % 995 1129 3
30 % 1734 1964 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 833
95 % 14 27 878
90 % 14 27 911
70 % 14 27 935
50 % 247 277 41
40 % 247 277 51
30 % 1735 1964 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 24 614
95 % 14 28 635
90 % 14 28 661
70 % 14 28 704
50 % 49 64 309
40 % 49 64 330
30 % 1736 1964 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 1302
95 % 14 16 1326
90 % 14 16 1346
70 % 14 16 1371
50 % 247 268 46
40 % 247 268 59
30 % 509 550 12
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37029
95 % 14 16 1321
90 % 14 16 1342
70 % 14 16 1367
50 % 247 278 38
40 % 247 278 48
30 % 247 278 67

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.