Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 24 828
95 % 14 28 870
90 % 14 28 903
70 % 14 28 935
50 % 249 280 47
40 % 249 281 53
30 % 1744 1989 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40923
95 % 14 28 873
90 % 14 28 907
70 % 14 28 939
50 % 249 280 48
40 % 249 281 54
30 % 249 281 72
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 885
95 % 14 28 874
90 % 14 28 908
70 % 14 28 940
50 % 14 28 990
40 % 248 280 57
30 % 248 280 75
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 15 1266
95 % 14 17 1324
90 % 14 17 1349
70 % 243 253 27
50 % 243 254 65
40 % 243 254 86
30 % 512 557 12
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 1383
95 % 14 18 1228
90 % 14 18 1258
70 % 14 18 1288
50 % 14 18 1335
40 % 249 280 56
30 % 249 281 71
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39782
95 % 14 18 1225
90 % 14 18 1255
70 % 14 18 1286
50 % 14 18 1334
40 % 249 270 62
30 % 249 270 78
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 24 829
95 % 14 28 872
90 % 14 28 905
70 % 14 28 938
50 % 249 281 44
40 % 1000 1144 3
30 % 1745 1989 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 24 826
95 % 14 28 868
90 % 14 28 901
70 % 14 28 933
50 % 249 281 43
40 % 1001 1144 3
30 % 1746 1989 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 880
95 % 14 29 869
90 % 14 29 902
70 % 14 29 934
50 % 249 281 46
40 % 1002 1144 3
30 % 1747 1989 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38464
95 % 14 28 871
90 % 14 28 904
70 % 14 28 937
50 % 249 282 40
40 % 1003 1144 3
30 % 1748 1989 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 879
95 % 14 29 867
90 % 14 29 900
70 % 14 29 932
50 % 249 281 45
40 % 249 281 55
30 % 1749 1989 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 25 628
95 % 14 29 656
90 % 14 29 681
70 % 14 29 726
50 % 49 65 334
40 % 49 65 355
30 % 1750 1989 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 1386
95 % 14 16 1395
90 % 14 16 1417
70 % 14 16 1421
50 % 249 270 50
40 % 249 270 63
30 % 513 557 12
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38796
95 % 14 16 1388
90 % 14 16 1411
70 % 14 16 1417
50 % 249 281 42
40 % 249 281 52
30 % 249 281 70

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.