Sequence Similarity Clusters for the Entities in PDB 1IR2

Entity #1 | Chains: A,B,C,D,E,F,G,H,S,T,U,V,W,X,Y,Z
Large subunit of Rubisco protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 1098
95 % 3 13 350 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.2
PDBFlex
90 % 8 34 168
70 % 9 42 103
50 % 9 49 131
40 % 9 58 124
30 % 12 88 92
Entity #2 | Chains: 1,2,3,4,5,6,7,8,I,J,K,L,M,N,O,P
Small subunit of Rubisco protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 3474
95 % 3 11 469 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 11 502
70 % 3 13 410
50 % 7 33 241
40 % 8 38 225
30 % 8 38 234

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures