Sequence Similarity Clusters for the Entities in PDB 1IR2

Entity #1 | Chains: A,B,C,D,E,F,G,H,S,T,U,V,W,X,Y,Z
Large subunit of Rubisco protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 1072
95 % 3 13 343 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.2
PDBFlex
90 % 8 34 164
70 % 9 41 162
50 % 9 48 173
40 % 9 57 146
30 % 12 87 116
Entity #2 | Chains: 1,2,3,4,5,6,7,8,I,J,K,L,M,N,O,P
Small subunit of Rubisco protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 3408
95 % 3 11 428 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 11 462
70 % 3 13 405
50 % 7 33 235
40 % 8 38 219
30 % 8 38 229

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.