Sequence Similarity Clusters for the Entities in PDB 1IR2

Entity #1 | Chains: A,B,C,D,E,F,G,H,S,T,U,V,W,X,Y,Z
Large subunit of Rubisco protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 1119
95 % 3 13 356 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.2
PDBFlex
90 % 9 35 168
70 % 10 43 104
50 % 10 51 124
40 % 10 60 121
30 % 13 90 94
Entity #2 | Chains: 1,2,3,4,5,6,7,8,I,J,K,L,M,N,O,P
Small subunit of Rubisco protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 3541
95 % 3 11 474 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 11 510
70 % 3 13 424
50 % 7 33 250
40 % 8 38 228
30 % 8 38 239

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures