Sequence Similarity Clusters for the Entities in PDB 1IR1

Entity #1 | Chains: A,B,C,D
Large subunit of Rubisco protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 2318
95 % 2 10 962 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 7 34 164
70 % 8 41 161
50 % 8 48 172
40 % 8 57 144
30 % 10 87 114
Entity #2 | Chains: S,T,U,V
Small subunit of Rubisco protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22854
95 % 1 1 19558 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 10 1008
70 % 4 20 601
50 % 6 33 231
40 % 7 38 215
30 % 7 38 224

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.