Sequence Similarity Clusters for the Entities in PDB 1IR1

Entity #1 | Chains: A,B,C,D
Large subunit of Rubisco protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 2459
95 % 2 10 998 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 8 35 168
70 % 9 43 104
50 % 9 51 124
40 % 9 60 121
30 % 11 90 94
Entity #2 | Chains: S,T,U,V
Small subunit of Rubisco protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23990
95 % 1 1 20500 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 10 1047
70 % 4 20 637
50 % 6 33 250
40 % 7 38 228
30 % 7 38 239

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures