Sequence Similarity Clusters for the Entities in PDB 1IR1

Entity #1 | Chains: A,B,C,D
Large subunit of Rubisco protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 2351
95 % 2 10 968 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 7 34 164
70 % 8 41 162
50 % 8 48 173
40 % 8 57 146
30 % 10 87 116
Entity #2 | Chains: S,T,U,V
Small subunit of Rubisco protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23261
95 % 1 1 19936 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 10 1017
70 % 4 20 615
50 % 6 33 235
40 % 7 38 219
30 % 7 38 229

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.