Sequence Similarity Clusters for the Entities in PDB 1IR1

Entity #1 | Chains: A,B,C,D
Large subunit of Rubisco protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 836
95 % 2 10 1022 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 8 35 194
70 % 9 43 122
50 % 9 52 125
40 % 9 61 124
30 % 11 91 102
Entity #2 | Chains: S,T,U,V
Small subunit of Rubisco protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24503
95 % 1 1 21723 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 10 1069
70 % 4 20 660
50 % 6 33 259
40 % 7 38 242
30 % 7 38 257

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures