Sequence Similarity Clusters for the Entities in PDB 1IQW

Entity #1 | Chains: L
ANTIBODY M-HFE7A, LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60886
95 % 3 10 5207 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 29 101 156
70 % 929 2385 1
50 % 1903 4827 1
40 % 1903 4827 1
30 % 2152 5688 1
Entity #2 | Chains: H
ANTIBODY M-HFE7A, HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60029
95 % 1 1 42261
90 % 5 29 883
70 % 917 2334 2
50 % 1904 4827 1
40 % 1904 4827 1
30 % 2153 5688 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures