Sequence Similarity Clusters for the Entities in PDB 1IQM

Entity #1 | Chains: A
coagulation Factor Xa protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 104 119 208
95 % 117 134 247 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 117 134 261
70 % 117 135 288
50 % 641 677 14
40 % 1530 1682 4
30 % 1652 1831 6
Entity #2 | Chains: L
coagulation Factor Xa protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 25 1283
95 % 16 26 1635 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.1
PDBFlex
90 % 16 26 1670
70 % 16 26 1692
50 % 16 26 1734
40 % 18 31 1455
30 % 18 31 1432

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.