Sequence Similarity Clusters for the Entities in PDB 1IQM

Entity #1 | Chains: A
coagulation Factor Xa protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 104 119 214
95 % 117 134 256 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 117 134 270
70 % 117 135 301
50 % 648 683 14
40 % 1546 1698 4
30 % 1669 1848 6
Entity #2 | Chains: L
coagulation Factor Xa protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 25 1326
95 % 16 26 1678 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.2
PDBFlex
90 % 16 26 1715
70 % 16 26 1737
50 % 16 26 1780
40 % 18 31 1486
30 % 18 31 1457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.