Sequence Similarity Clusters for the Entities in PDB 1IQI

Entity #1 | Chains: A
coagulation Factor Xa protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 119 215
95 % 120 134 257
90 % 120 134 271
70 % 120 135 307
50 % 653 683 14
40 % 1566 1698 4
30 % 1693 1848 6
Entity #2 | Chains: L
coagulation Factor Xa protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 25 1328
95 % 17 26 1678 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.2
PDBFlex
90 % 17 26 1715
70 % 17 26 1737
50 % 17 26 1783
40 % 19 31 1486
30 % 19 31 1457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures