Sequence Similarity Clusters for the Entities in PDB 1IQI

Entity #1 | Chains: A
coagulation Factor Xa protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 134 211
95 % 120 134 269
90 % 120 134 280
70 % 120 135 320
50 % 674 708 14
40 % 1718 1873 4
30 % 1727 1887 7
Entity #2 | Chains: L
coagulation Factor Xa protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 26 1487
95 % 17 26 1761 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.2
PDBFlex
90 % 17 26 1806
70 % 17 26 1816
50 % 17 26 1852
40 % 19 31 1524
30 % 19 31 1518

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures