Sequence Similarity Clusters for the Entities in PDB 1IQH

Entity #1 | Chains: A
coagulation Factor Xa protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 124 136 209
95 % 124 136 268 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 124 136 279
70 % 124 137 320
50 % 679 710 14
40 % 1740 1885 4
30 % 1750 1899 7
Entity #2 | Chains: L
coagulation Factor Xa protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 26 1503
95 % 19 26 1776 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.1
PDBFlex
90 % 19 26 1819
70 % 19 26 1833
50 % 19 26 1867
40 % 21 31 1532
30 % 21 31 1520

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures