Sequence Similarity Clusters for the Entities in PDB 1IQH

Entity #1 | Chains: A
coagulation Factor Xa protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 109 119 219
95 % 122 134 260 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 122 134 274
70 % 122 135 311
50 % 670 698 14
40 % 1595 1720 4
30 % 1725 1870 6
Entity #2 | Chains: L
coagulation Factor Xa protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 25 1352
95 % 19 26 1718
90 % 19 26 1760
70 % 19 26 1779
50 % 19 26 1822
40 % 21 31 1508
30 % 21 31 1480

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures