Sequence Similarity Clusters for the Entities in PDB 1IQD

Entity #1 | Chains: A
HUMAN MONOCLONAL BO2C11 FAB LIGHT CHAIN protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61243
95 % 21 85 243 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 167 724 3
70 % 554 2346 1
50 % 1143 4752 1
40 % 1143 4752 1
30 % 1267 5606 1
Entity #2 | Chains: B
HUMAN MONOCLONAL BO2C11 FAB HEAVY CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60802
95 % 1 1 42630
90 % 1 1 40566
70 % 553 2299 2
50 % 1144 4752 1
40 % 1144 4752 1
30 % 1268 5606 1
Entity #3 | Chains: C
HUMAN FACTOR VIII protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43733
95 % 4 6 9601 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 7165
70 % 4 7 6975
50 % 4 7 6445
40 % 17 26 1282
30 % 19 30 1161

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.