Sequence Similarity Clusters for the Entities in PDB 1IQD

Entity #1 | Chains: A
HUMAN MONOCLONAL BO2C11 FAB LIGHT CHAIN protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59023
95 % 21 76 285 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 2.0
PDBFlex
90 % 155 676 3
70 % 433 1828 2
50 % 1089 4501 1
40 % 1089 4501 1
30 % 1205 5303 1
Entity #2 | Chains: B
HUMAN MONOCLONAL BO2C11 FAB HEAVY CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58601
95 % 1 1 41052
90 % 1 1 39128
70 % 527 2178 1
50 % 1090 4501 1
40 % 1090 4501 1
30 % 1206 5303 1
Entity #3 | Chains: C
HUMAN FACTOR VIII protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42114
95 % 4 6 9233 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 6876
70 % 4 7 6671
50 % 4 7 6183
40 % 17 26 1239
30 % 19 30 1116

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.