Sequence Similarity Clusters for the Entities in PDB 1IQD

Entity #1 | Chains: A
HUMAN MONOCLONAL BO2C11 FAB LIGHT CHAIN protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59682
95 % 21 78 269 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 157 693 3
70 % 531 2264 1
50 % 1097 4587 1
40 % 1097 4587 1
30 % 1213 5392 1
Entity #2 | Chains: B
HUMAN MONOCLONAL BO2C11 FAB HEAVY CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59254
95 % 1 1 41524
90 % 1 1 39558
70 % 531 2222 2
50 % 1098 4587 1
40 % 1098 4587 1
30 % 1214 5392 1
Entity #3 | Chains: C
HUMAN FACTOR VIII protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42600
95 % 4 6 9362 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 4 7 6968
70 % 4 7 6756
50 % 4 7 6255
40 % 17 26 1257
30 % 19 30 1132

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.