Sequence Similarity Clusters for the Entities in PDB 1IQD

Entity #1 | Chains: A
HUMAN MONOCLONAL BO2C11 FAB LIGHT CHAIN protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63091
95 % 21 90 246 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 195 791 2
70 % 601 2479 1
50 % 1239 5021 1
40 % 1239 5021 1
30 % 1404 5951 1
Entity #2 | Chains: B
HUMAN MONOCLONAL BO2C11 FAB HEAVY CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62632
95 % 1 1 43852
90 % 1 1 41677
70 % 600 2429 2
50 % 1240 5021 1
40 % 1240 5021 1
30 % 1405 5951 1
Entity #3 | Chains: C
HUMAN FACTOR VIII protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45115
95 % 4 6 9920 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 7410
70 % 4 7 7199
50 % 4 7 6652
40 % 17 26 1320
30 % 19 30 1197

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures