Sequence Similarity Clusters for the Entities in PDB 1IQD

Entity #1 | Chains: A
HUMAN MONOCLONAL BO2C11 FAB LIGHT CHAIN protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60540
95 % 21 79 268 Flexibility: Low
Max RMSD: 6.0, Avg RMSD: 1.9
PDBFlex
90 % 158 701 3
70 % 536 2287 1
50 % 1107 4633 1
40 % 1107 4633 1
30 % 1229 5461 1
Entity #2 | Chains: B
HUMAN MONOCLONAL BO2C11 FAB HEAVY CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60108
95 % 1 1 42139
90 % 1 1 40126
70 % 536 2244 2
50 % 1108 4633 1
40 % 1108 4633 1
30 % 1230 5461 1
Entity #3 | Chains: C
HUMAN FACTOR VIII protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43247
95 % 4 6 9490 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 7077
70 % 4 7 6899
50 % 4 7 6373
40 % 17 26 1270
30 % 19 30 1145

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.