Sequence Similarity Clusters for the Entities in PDB 1IOD

Entity #1 | Chains: A
COAGULATION FACTOR X BINDING PROTEIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67091
95 % 2 2 34219 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 3 3 23440
70 % 6 9 5925
50 % 12 28 1275
40 % 24 60 629
30 % 118 220 101
Entity #2 | Chains: B
COAGULATION FACTOR X BINDING PROTEIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29300
95 % 3 3 24324
90 % 3 3 23521
70 % 6 9 5943
50 % 10 25 1510
40 % 25 60 629
30 % 119 220 101
Entity #3 | Chains: G
COAGULATION FACTOR X GLA DOMAIN protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73973
95 % 1 1 51481
90 % 1 1 48831
70 % 1 1 42780
50 % 1 1 36491
40 % 1 1 32125
30 % 1 1 27178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures