Sequence Similarity Clusters for the Entities in PDB 1IOD

Entity #1 | Chains: A
COAGULATION FACTOR X BINDING PROTEIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31652
95 % 2 2 27430 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 3 3 21884
70 % 6 9 5682
50 % 12 29 1290
40 % 27 65 533
30 % 179 291 51
Entity #2 | Chains: B
COAGULATION FACTOR X BINDING PROTEIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26807
95 % 3 3 23584
90 % 3 3 22827
70 % 6 9 5757
50 % 10 25 1560
40 % 28 65 533
30 % 180 291 51
Entity #3 | Chains: G
COAGULATION FACTOR X GLA DOMAIN protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61593
95 % 1 1 50154
90 % 1 1 47594
70 % 1 1 41713
50 % 1 1 35399
40 % 1 1 31020
30 % 1 1 25925

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures