Sequence Similarity Clusters for the Entities in PDB 1IOD

Entity #1 | Chains: A
COAGULATION FACTOR X BINDING PROTEIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65240
95 % 2 2 33294 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 3 3 22739
70 % 6 9 5760
50 % 12 28 1246
40 % 24 60 611
30 % 118 220 96
Entity #2 | Chains: B
COAGULATION FACTOR X BINDING PROTEIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28421
95 % 3 3 23567 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 3 3 22809
70 % 6 9 5778
50 % 10 25 1471
40 % 25 60 611
30 % 119 220 96
Entity #3 | Chains: G
COAGULATION FACTOR X GLA DOMAIN protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71926
95 % 1 1 50012
90 % 1 1 47493
70 % 1 1 41769
50 % 1 1 35723
40 % 1 1 31474
30 % 1 1 26623

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.