Sequence Similarity Clusters for the Entities in PDB 1IOD

Entity #1 | Chains: A
COAGULATION FACTOR X BINDING PROTEIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66246
95 % 2 2 33790 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 3 3 23171
70 % 6 9 5851
50 % 12 28 1257
40 % 24 60 620
30 % 118 220 99
Entity #2 | Chains: B
COAGULATION FACTOR X BINDING PROTEIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28939
95 % 3 3 24026 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 23244
70 % 6 9 5869
50 % 10 25 1488
40 % 25 60 620
30 % 119 220 99
Entity #3 | Chains: G
COAGULATION FACTOR X GLA DOMAIN protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73084
95 % 1 1 50883
90 % 1 1 48308
70 % 1 1 42364
50 % 1 1 36143
40 % 1 1 31828
30 % 1 1 26924

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.