Sequence Similarity Clusters for the Entities in PDB 1IO4

Entity #1 | Chains: E
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
CAAT/ENHANCER BINDING PROTEIN BETA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 4655
95 % 8 8 4497 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 8 8 4537
70 % 8 8 4440
50 % 8 8 4263
40 % 8 8 4037
30 % 8 8 3661
Entity #4 | Chains: C
RUNT-RELATED TRANSCRIPTION FACTOR 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 3692
95 % 11 13 2555 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 11 13 2625
70 % 11 13 2614
50 % 11 13 2598
40 % 11 13 2546
30 % 11 13 2375
Entity #5 | Chains: D
CORE-BINDING FACTOR, BETA SUBUNIT protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 3634
95 % 10 13 2829 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 10 13 2889
70 % 10 13 2859
50 % 10 13 2817
40 % 10 13 2735
30 % 10 13 2550

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1EAQ 1 A, B RUNT-RELATED TRANSCRIPTION FACTOR 1 ENGINEERED MUTATION CYS 72 SER, CYS 81 SER RUNT DOMAIN RESIDUES 36-185 10090
2 1EAO 1 A, B RUNT-RELATED TRANSCRIPTION FACTOR 1 ENGINEERED MUTATION CYS 72 SER, CYS 81 SER RUNT DOMAIN RESIDUES 46-185 10090
3 1EAN 1 A RUNT-RELATED TRANSCRIPTION FACTOR 1 RUNT DOMAIN RESIDUES 46-185 10090
4 1LJM 1 A, B RUNX1 transcription factor Runt domain 9606
5 3WU1 1 A Runt-related transcription factor 1 UNP RESIDUES 55-177 10090
6 2J6W 1 A, B RUNT-RELATED TRANSCRIPTION FACTOR 1 RUNT DOMAIN, RESIDUES 46-185 10090
7 1HJC 1 A, D RUNT-RELATED TRANSCRIPTION FACTOR 1 RESIDUES 60-182 10090
8 1H9D 1 A, C CORE-BINDING FACTOR ALPHA SUBUNIT1 RUNT DOMAIN RESIDUES 50-183 9606
9 1E50 1 A, C, E, G, Q, R CORE-BINDING FACTOR ALPHA SUBUNIT RUNT DOMAIN RESIDUES 50-183 9606
10 1HJB 2 C, F RUNT-RELATED TRANSCRIPTION FACTOR 1 RESIDUES 60-182 10090
11 1IO4 4 C RUNT-RELATED TRANSCRIPTION FACTOR 1 RUNT DOMAIN 10090
12 1CO1 1 A CORE BINDING FACTOR ALPHA RUNT DOMAIN 9606
13 1CMO 1 A POLYOMAVIRUS ENHANCER BINDING PROTEIN 2 CORE-BINDING FACTOR ALPHA B SUBUNIT, RUNT DOMAIN 9606