Sequence Similarity Clusters for the Entities in PDB 1IO4

Entity #1 | Chains: E
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
CAAT/ENHANCER BINDING PROTEIN BETA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 5727
95 % 8 8 4431 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 8 8 4471
70 % 8 8 4380
50 % 8 8 4204
40 % 8 8 4013
30 % 8 8 3721
Entity #4 | Chains: C
RUNT-RELATED TRANSCRIPTION FACTOR 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 3179
95 % 11 13 2462 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 11 13 2524
70 % 11 13 2521
50 % 11 13 2504
40 % 11 13 2467
30 % 11 13 2352
Entity #5 | Chains: D
CORE-BINDING FACTOR, BETA SUBUNIT protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 3030
95 % 10 13 2684 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 10 13 2737
70 % 10 13 2725
50 % 10 13 2690
40 % 10 13 2634
30 % 10 13 2489

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures