Sequence Similarity Clusters for the Entities in PDB 1IO4

Entity #1 | Chains: E
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
CAAT/ENHANCER BINDING PROTEIN BETA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 5127
95 % 8 8 4024
90 % 8 8 4049
70 % 8 8 3970
50 % 8 8 3846
40 % 8 8 3690
30 % 8 8 3428
Entity #4 | Chains: C
RUNT-RELATED TRANSCRIPTION FACTOR 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 2856
95 % 11 13 2209
90 % 11 13 2273
70 % 11 13 2269
50 % 11 13 2248
40 % 11 13 2241
30 % 11 13 2140
Entity #5 | Chains: D
CORE-BINDING FACTOR, BETA SUBUNIT protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 2719
95 % 10 13 2425
90 % 10 13 2478
70 % 10 13 2462
50 % 10 13 2420
40 % 10 13 2388
30 % 10 13 2261

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.