Sequence Similarity Clusters for the Entities in PDB 1IO4

Entity #1 | Chains: E
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
CAAT/ENHANCER BINDING PROTEIN BETA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 4759
95 % 8 8 4604 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 8 8 4632
70 % 8 8 4512
50 % 8 8 4322
40 % 8 8 4091
30 % 8 8 3710
Entity #4 | Chains: C
RUNT-RELATED TRANSCRIPTION FACTOR 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 3773
95 % 11 13 2597 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 11 13 2664
70 % 11 13 2657
50 % 11 13 2630
40 % 11 13 2580
30 % 11 13 2412
Entity #5 | Chains: D
CORE-BINDING FACTOR, BETA SUBUNIT protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 3711
95 % 10 13 2875 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 10 13 2935
70 % 10 13 2905
50 % 10 13 2853
40 % 10 13 2775
30 % 10 13 2588

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures