Sequence Similarity Clusters for the Entities in PDB 1IO4

Entity #1 | Chains: E
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
CSF-1R PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
CAAT/ENHANCER BINDING PROTEIN BETA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 4620
95 % 8 8 4464 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 8 8 4506
70 % 8 8 4409
50 % 8 8 4240
40 % 8 8 4014
30 % 8 8 3650
Entity #4 | Chains: C
RUNT-RELATED TRANSCRIPTION FACTOR 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 3660
95 % 11 13 2533 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 11 13 2603
70 % 11 13 2594
50 % 11 13 2581
40 % 11 13 2531
30 % 11 13 2361
Entity #5 | Chains: D
CORE-BINDING FACTOR, BETA SUBUNIT protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 3600
95 % 10 13 2804 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 10 13 2866
70 % 10 13 2840
50 % 10 13 2799
40 % 10 13 2718
30 % 10 13 2535

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures