Sequence Similarity Clusters for the Entities in PDB 1INQ

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 63 200
95 % 22 67 252 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 22 69 265
70 % 405 727 6
50 % 406 732 6
40 % 431 783 10
30 % 463 907 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 135 96
95 % 83 228 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 83 228 67
70 % 482 922 4
50 % 491 944 3
40 % 491 944 7
30 % 491 944 12
Entity #3 | Chains: C
MHC Class I H13a minor histocompatibility peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures