Sequence Similarity Clusters for the Entities in PDB 1IMH

Entity #1 | Chains: A
5'-D(*TP*TP*GP*CP*TP*GP*GP*AP*AP*AP*AP*AP*TP*AP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*TP*TP*CP*CP*AP*GP*C)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,D
NUCLEAR FACTOR OF ACTIVATED T CELLS 5 protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37289
95 % 1 1 29099 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 2.3
PDBFlex
90 % 1 1 28089
70 % 1 1 25365
50 % 1 1 21721
40 % 5 9 2337
30 % 5 9 2239

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.