Sequence Similarity Clusters for the Entities in PDB 1IMH

Entity #1 | Chains: A
5'-D(*TP*TP*GP*CP*TP*GP*GP*AP*AP*AP*AP*AP*TP*AP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*TP*TP*CP*CP*AP*GP*C)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,D
NUCLEAR FACTOR OF ACTIVATED T CELLS 5 protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38097
95 % 1 1 29682 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 2.3
PDBFlex
90 % 1 1 28633
70 % 1 1 25823
50 % 1 1 22103
40 % 5 9 2411
30 % 5 9 2298

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures