Sequence Similarity Clusters for the Entities in PDB 1IMH

Entity #1 | Chains: A
5'-D(*TP*TP*GP*CP*TP*GP*GP*AP*AP*AP*AP*AP*TP*AP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*TP*TP*CP*CP*AP*GP*C)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,D
NUCLEAR FACTOR OF ACTIVATED T CELLS 5 protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38561
95 % 1 1 30039 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 2.3
PDBFlex
90 % 1 1 28969
70 % 1 1 26112
50 % 1 1 22338
40 % 5 9 2438
30 % 5 9 2326

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures