Sequence Similarity Clusters for the Entities in PDB 1IM9

Entity #1 | Chains: A,E
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-4 CW*0401 ALPHA CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26448
95 % 9 10 4337
90 % 187 200 132
70 % 594 692 6
50 % 596 697 6
40 % 636 748 10
30 % 700 868 15
Entity #2 | Chains: B,F
Beta-2 microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 517 600 2
95 % 555 644 3
90 % 563 653 4
70 % 728 885 4
50 % 742 907 3
40 % 742 907 9
30 % 742 907 14
Entity #3 | Chains: C,G
HLA-Cw4-specific peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DL1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58866
95 % 1 1 41404
90 % 1 1 39515
70 % 1 1 34990
50 % 1 1 29833
40 % 1 1 26316
30 % 1 1 22303

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.