Sequence Similarity Clusters for the Entities in PDB 1IM9

Entity #1 | Chains: A,E
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-4 CW*0401 ALPHA CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 25020
95 % 2 2 20971
90 % 171 184 141
70 % 555 649 7
50 % 557 654 7
40 % 593 701 11
30 % 654 817 14
Entity #2 | Chains: B,F
Beta-2 microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 488 568 2
95 % 525 611 3
90 % 533 620 4
70 % 693 847 5
50 % 705 867 5
40 % 705 867 9
30 % 705 867 13
Entity #3 | Chains: C,G
HLA-Cw4-specific peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DL1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55984
95 % 1 1 39341
90 % 1 1 37627
70 % 1 1 33435
50 % 1 1 28592
40 % 1 1 25229
30 % 1 1 21384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.