Sequence Similarity Clusters for the Entities in PDB 1IM9

Entity #1 | Chains: A,E
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-4 CW*0401 ALPHA CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27418
95 % 9 10 4508 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 188 201 138
70 % 617 727 6
50 % 619 732 6
40 % 659 783 10
30 % 729 909 15
Entity #2 | Chains: B,F
Beta-2 microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 532 624 2
95 % 570 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 578 677 4
70 % 754 924 4
50 % 768 946 3
40 % 768 946 7
30 % 768 946 12
Entity #3 | Chains: C,G
HLA-Cw4-specific peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DL1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60886
95 % 1 1 42792
90 % 1 1 40783
70 % 1 1 36040
50 % 1 1 30697
40 % 1 1 27068
30 % 1 1 22934

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures