Sequence Similarity Clusters for the Entities in PDB 1IM9

Entity #1 | Chains: A,E
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-4 CW*0401 ALPHA CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24723
95 % 2 2 20736
90 % 166 179 143
70 % 549 643 7
50 % 551 648 7
40 % 582 690 11
30 % 643 806 14
Entity #2 | Chains: B,F
Beta-2 microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 477 557 2
95 % 514 600 3
90 % 522 609 4
70 % 682 836 5
50 % 694 856 5
40 % 694 856 9
30 % 694 856 13
Entity #3 | Chains: C,G
HLA-Cw4-specific peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DL1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55360
95 % 1 1 38871
90 % 1 1 37173
70 % 1 1 33053
50 % 1 1 28271
40 % 1 1 24946
30 % 1 1 21126

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.