Sequence Similarity Clusters for the Entities in PDB 1IM9

Entity #1 | Chains: A,E
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-4 CW*0401 ALPHA CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27778
95 % 9 10 4685 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 196 209 137
70 % 633 746 6
50 % 644 760 7
40 % 678 812 9
30 % 753 939 13
Entity #2 | Chains: B,F
Beta-2 microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 576 675 2
95 % 588 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 596 699 4
70 % 777 953 4
50 % 791 975 3
40 % 791 975 6
30 % 791 975 9
Entity #3 | Chains: C,G
HLA-Cw4-specific peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DL1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52858
95 % 1 1 43547
90 % 1 1 41442
70 % 1 1 33390
50 % 1 1 28368
40 % 1 1 24870
30 % 1 1 20716

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures