Sequence Similarity Clusters for the Entities in PDB 1IM3

Entity #1 | Chains: A,E,I,M
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 109 197 52
95 % 144 246 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 158 290 36
70 % 375 684 6
50 % 376 689 6
40 % 398 739 10
30 % 424 856 15
Entity #2 | Chains: B,F,J,N
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 341 593 2
95 % 369 636 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 372 645 4
70 % 448 875 4
50 % 456 897 4
40 % 456 897 9
30 % 456 897 14
Entity #3 | Chains: C,G,K,O
Human T-cell lymphotropic virus type 1 Tax peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
cytomegalovirus protein US2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23466
95 % 1 1 20002 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 1 19445
70 % 1 1 17912
50 % 1 1 15575
40 % 1 1 13890
30 % 1 1 11887

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.