Sequence Similarity Clusters for the Entities in PDB 1IM3

Entity #1 | Chains: A,E,I,M
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 118 212 58
95 % 150 256 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 166 310 36
70 % 400 740 6
50 % 406 754 7
40 % 425 806 9
30 % 456 930 12
Entity #2 | Chains: B,F,J,N
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 378 666 2
95 % 387 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 390 690 4
70 % 476 944 4
50 % 484 966 3
40 % 484 966 6
30 % 484 966 9
Entity #3 | Chains: C,G,K,O
Human T-cell lymphotropic virus type 1 Tax peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
cytomegalovirus protein US2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24019
95 % 1 1 21326 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 1 20691
70 % 1 1 17781
50 % 1 1 15459
40 % 1 1 13736
30 % 1 1 11546

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures