Sequence Similarity Clusters for the Entities in PDB 1IM3

Entity #1 | Chains: A,E,I,M
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 109 197 52
95 % 144 246 58 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 156 287 36
70 % 371 679 6
50 % 372 684 6
40 % 394 734 10
30 % 420 851 15
Entity #2 | Chains: B,F,J,N
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 337 588 2
95 % 365 631 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 368 640 4
70 % 444 870 4
50 % 452 892 4
40 % 452 892 8
30 % 452 892 14
Entity #3 | Chains: C,G,K,O
Human T-cell lymphotropic virus type 1 Tax peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
cytomegalovirus protein US2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23129
95 % 1 1 19726 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 1 19184
70 % 1 1 17690
50 % 1 1 15396
40 % 1 1 13726
30 % 1 1 11748

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.