Sequence Similarity Clusters for the Entities in PDB 1IM3

Entity #1 | Chains: A,E,I,M
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 204 52
95 % 149 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 163 302 35
70 % 388 719 6
50 % 389 724 6
40 % 412 775 10
30 % 443 899 15
Entity #2 | Chains: B,F,J,N
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 351 618 2
95 % 379 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 382 671 4
70 % 465 916 4
50 % 473 938 3
40 % 473 938 7
30 % 473 938 12
Entity #3 | Chains: C,G,K,O
Human T-cell lymphotropic virus type 1 Tax peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
cytomegalovirus protein US2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24174
95 % 1 1 20625 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 1 20049
70 % 1 1 18417
50 % 1 1 15984
40 % 1 1 14246
30 % 1 1 12194

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures