Sequence Similarity Clusters for the Entities in PDB 1IM3

Entity #1 | Chains: A,E,I,M
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 111 199 53
95 % 147 249 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 161 297 36
70 % 381 705 6
50 % 382 710 6
40 % 405 761 10
30 % 433 881 15
Entity #2 | Chains: B,F,J,N
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 345 607 2
95 % 373 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 376 660 4
70 % 456 898 4
50 % 464 920 3
40 % 464 920 8
30 % 464 920 12
Entity #3 | Chains: C,G,K,O
Human T-cell lymphotropic virus type 1 Tax peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
cytomegalovirus protein US2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23884
95 % 1 1 20392 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 19822
70 % 1 1 18207
50 % 1 1 15815
40 % 1 1 14102
30 % 1 1 12068

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.