Sequence Similarity Clusters for the Entities in PDB 1IKX

Entity #1 | Chains: A
POL POLYPROTEIN protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25600
95 % 114 252 92 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 114 252 97
70 % 114 252 114
50 % 115 253 152
40 % 115 254 165
30 % 115 254 179
Entity #2 | Chains: B
POL POLYPROTEIN protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26015
95 % 110 246 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 110 246 120
70 % 110 246 136
50 % 111 248 159
40 % 111 248 176
30 % 111 248 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures