Sequence Similarity Clusters for the Entities in PDB 1IKV

Entity #1 | Chains: A
POL POLYPROTEIN protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 70 107 254
95 % 192 258 115 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 192 258 119
70 % 192 258 133
50 % 193 259 161
40 % 194 260 172
30 % 194 260 190
Entity #2 | Chains: B
POL POLYPROTEIN protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 76 118 219
95 % 187 252 120 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 187 252 123
70 % 187 252 140
50 % 189 254 169
40 % 189 254 182
30 % 189 254 201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures