Sequence Similarity Clusters for the Entities in PDB 1IKN

Entity #1 | Chains: A
PROTEIN (NF-KAPPA-B P65 SUBUNIT) protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 2464
95 % 1 11 2794 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.8
PDBFlex
90 % 1 11 2840
70 % 1 11 2814
50 % 1 14 2278
40 % 2 26 1249
30 % 2 26 1221
Entity #2 | Chains: C
PROTEIN (NF-KAPPA-B P50D SUBUNIT) protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15861
95 % 7 10 4236 Flexibility: Low
Max RMSD: 17.6, Avg RMSD: 2.6
PDBFlex
90 % 7 10 4264
70 % 7 10 4190
50 % 13 24 1360
40 % 13 24 1369
30 % 13 24 1350
Entity #3 | Chains: D
PROTEIN (I-KAPPA-B-ALPHA) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27332
95 % 1 2 22817 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 1 2 22141
70 % 1 2 20299
50 % 1 2 17588
40 % 1 2 15685
30 % 1 2 13413

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.