Sequence Similarity Clusters for the Entities in PDB 1IKN

Entity #1 | Chains: A
PROTEIN (NF-KAPPA-B P65 SUBUNIT) protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 2571
95 % 1 11 2902 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.8
PDBFlex
90 % 1 11 2948
70 % 1 11 2920
50 % 1 14 2402
40 % 2 26 1292
30 % 2 26 1262
Entity #2 | Chains: C
PROTEIN (NF-KAPPA-B P50D SUBUNIT) protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16509
95 % 7 10 4396 Flexibility: Low
Max RMSD: 17.6, Avg RMSD: 2.6
PDBFlex
90 % 7 10 4433
70 % 7 10 4347
50 % 13 24 1403
40 % 13 24 1407
30 % 13 24 1391
Entity #3 | Chains: D
PROTEIN (I-KAPPA-B-ALPHA) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28325
95 % 1 2 23607 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 1 2 22881
70 % 1 2 20965
50 % 1 2 18128
40 % 1 2 16146
30 % 1 2 13806

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures