Sequence Similarity Clusters for the Entities in PDB 1IKN

Entity #1 | Chains: A
PROTEIN (NF-KAPPA-B P65 SUBUNIT) protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 3244
95 % 1 10 3442
90 % 1 10 3485
70 % 1 10 3439
50 % 1 13 2731
40 % 2 25 1342
30 % 2 25 1321
Entity #2 | Chains: C
PROTEIN (NF-KAPPA-B P50D SUBUNIT) protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 15625
95 % 7 10 4172
90 % 7 10 4201
70 % 7 10 4128
50 % 13 24 1343
40 % 13 24 1354
30 % 13 24 1336
Entity #3 | Chains: D
PROTEIN (I-KAPPA-B-ALPHA) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 26978
95 % 1 2 22529
90 % 1 2 21870
70 % 1 2 20063
50 % 1 2 17390
40 % 1 2 15510
30 % 1 2 13257

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.