Sequence Similarity Clusters for the Entities in PDB 1IKN

Entity #1 | Chains: A
PROTEIN (NF-KAPPA-B P65 SUBUNIT) protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 2934
95 % 1 11 2937 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 4.1
PDBFlex
90 % 1 11 2997
70 % 1 11 2948
50 % 1 14 2426
40 % 2 26 1293
30 % 2 26 1288
Entity #2 | Chains: C
PROTEIN (NF-KAPPA-B P50D SUBUNIT) protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24951
95 % 7 10 4496 Flexibility: Low
Max RMSD: 17.6, Avg RMSD: 2.6
PDBFlex
90 % 7 10 4539
70 % 7 10 4430
50 % 13 24 1435
40 % 13 24 1386
30 % 13 24 1379
Entity #3 | Chains: D
PROTEIN (I-KAPPA-B-ALPHA) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27708
95 % 1 2 24289 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 1 2 23489
70 % 1 2 21377
50 % 1 2 18391
40 % 1 2 16251
30 % 1 2 13614

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures