Sequence Similarity Clusters for the Entities in PDB 1IKN

Entity #1 | Chains: A
PROTEIN (NF-KAPPA-B P65 SUBUNIT) protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 3155
95 % 1 10 3363 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.5
PDBFlex
90 % 1 10 3407
70 % 1 10 3365
50 % 1 13 2675
40 % 2 25 1319
30 % 2 25 1300
Entity #2 | Chains: C
PROTEIN (NF-KAPPA-B P50D SUBUNIT) protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15248
95 % 7 10 4068 Flexibility: Low
Max RMSD: 17.6, Avg RMSD: 2.9
PDBFlex
90 % 7 10 4093
70 % 7 10 4017
50 % 13 24 1318
40 % 13 24 1332
30 % 13 24 1315
Entity #3 | Chains: D
PROTEIN (I-KAPPA-B-ALPHA) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26287
95 % 1 2 21944 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 1 2 21317
70 % 1 2 19641
50 % 1 2 17044
40 % 1 2 15199
30 % 1 2 12991

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.