Sequence Similarity Clusters for the Entities in PDB 1IKI

Entity #1 | Chains: A
D-ALANYL-D-ALANINE CARBOXYPEPTIDASE protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 3585
95 % 10 15 4370 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 10 15 4397
70 % 10 15 4313
50 % 10 15 4157
40 % 10 15 3975
30 % 10 16 3449

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.