Sequence Similarity Clusters for the Entities in PDB 1IKF

Entity #1 | Chains: L
IGG1-KAPPA R45-45-11 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62672
95 % 16 54 579 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 23 68 398
70 % 955 2474 1
50 % 1953 5011 1
40 % 1953 5011 1
30 % 2236 5941 1
Entity #2 | Chains: H
IGG1-KAPPA R45-45-11 FAB (HEAVY CHAIN) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61400
95 % 1 1 43157
90 % 1 1 41130
70 % 943 2424 2
50 % 1954 5011 1
40 % 1954 5011 1
30 % 2237 5941 1
Entity #3 | Chains: C
CYCLOSPORIN A protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures