Sequence Similarity Clusters for the Entities in PDB 1IKF

Entity #1 | Chains: L
IGG1-KAPPA R45-45-11 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53712
95 % 16 54 596 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 23 68 427
70 % 1007 2621 1
50 % 2068 5323 1
40 % 2377 6003 1
30 % 2889 7460 1
Entity #2 | Chains: H
IGG1-KAPPA R45-45-11 FAB (HEAVY CHAIN) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55836
95 % 1 1 45808
90 % 1 1 43526
70 % 999 2580 2
50 % 2069 5323 1
40 % 2378 6003 1
30 % 2890 7460 1
Entity #3 | Chains: C
CYCLOSPORIN A protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures