Sequence Similarity Clusters for the Entities in PDB 1IKF

Entity #1 | Chains: L
IGG1-KAPPA R45-45-11 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55985
95 % 16 54 647 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 23 68 473
70 % 1044 2765 1
50 % 2155 5625 1
40 % 2479 6382 1
30 % 3010 7934 1
Entity #2 | Chains: H
IGG1-KAPPA R45-45-11 FAB (HEAVY CHAIN) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58174
95 % 1 1 47717
90 % 1 1 45297
70 % 1041 2728 2
50 % 2156 5625 1
40 % 2480 6382 1
30 % 3011 7934 1
Entity #3 | Chains: C
CYCLOSPORIN A protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures