Sequence Similarity Clusters for the Entities in PDB 1IKF

Entity #1 | Chains: L
IGG1-KAPPA R45-45-11 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60940
95 % 16 54 555 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 23 68 373
70 % 896 2346 1
50 % 1833 4752 1
40 % 1833 4752 1
30 % 2067 5606 1
Entity #2 | Chains: H
IGG1-KAPPA R45-45-11 FAB (HEAVY CHAIN) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59703
95 % 1 1 42027
90 % 1 1 40098
70 % 885 2299 2
50 % 1834 4752 1
40 % 1834 4752 1
30 % 2068 5606 1
Entity #3 | Chains: C
CYCLOSPORIN A protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.