Sequence Similarity Clusters for the Entities in PDB 1IKF

Entity #1 | Chains: L
IGG1-KAPPA R45-45-11 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54813
95 % 16 54 623 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 23 68 437
70 % 1029 2696 1
50 % 2112 5473 1
40 % 2426 6175 1
30 % 2941 7653 1
Entity #2 | Chains: H
IGG1-KAPPA R45-45-11 FAB (HEAVY CHAIN) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56976
95 % 1 1 46768
90 % 1 1 44404
70 % 1021 2655 2
50 % 2113 5473 1
40 % 2427 6175 1
30 % 2942 7653 1
Entity #3 | Chains: C
CYCLOSPORIN A protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures