Sequence Similarity Clusters for the Entities in PDB 1IK9

Entity #1 | Chains: A,B
DNA REPAIR PROTEIN XRCC4 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33545
95 % 1 3 10185 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.3
PDBFlex
90 % 1 3 10052
70 % 1 3 9542
50 % 1 3 8641
40 % 1 3 7863
30 % 1 3 6936
Entity #2 | Chains: C
DNA LIGASE IV protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50906
95 % 1 1 42037
90 % 1 1 40043
70 % 1 1 35397
50 % 1 1 30070
40 % 1 1 26348
30 % 1 1 21984

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures