Sequence Similarity Clusters for the Entities in PDB 1IK9

Entity #1 | Chains: A,B
DNA REPAIR PROTEIN XRCC4 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39774
95 % 1 3 9055 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.4
PDBFlex
90 % 1 3 8963
70 % 4 7 3441
50 % 4 7 3364
40 % 4 7 3256
30 % 4 7 3037
Entity #2 | Chains: C
DNA LIGASE IV protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71863
95 % 1 1 50038
90 % 1 1 47537
70 % 1 1 41784
50 % 1 1 35729
40 % 1 1 31493
30 % 1 1 26663

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.