Sequence Similarity Clusters for the Entities in PDB 1IK9

Entity #1 | Chains: A,B
DNA REPAIR PROTEIN XRCC4 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40961
95 % 1 3 9330 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.3
PDBFlex
90 % 1 3 9225
70 % 4 9 2570
50 % 4 9 2542
40 % 4 9 2502
30 % 4 9 2375
Entity #2 | Chains: C
DNA LIGASE IV protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73943
95 % 1 1 51535
90 % 1 1 48912
70 % 1 1 42837
50 % 1 1 36540
40 % 1 1 32194
30 % 1 1 27268

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.