Sequence Similarity Clusters for the Entities in PDB 1IJS

Entity #1 | Chains: N
DNA (5'-D(*CP*CP*AP*CP*CP*CP*CP*AP*A)-3') dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA (5'-D(*AP*C)-3') dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
PROTEIN (PARVOVIRUS COAT PROTEIN) protein, length: 584 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26107
95 % 12 13 1267 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 12 13 1292
70 % 12 13 1322
50 % 18 20 494
40 % 18 20 535
30 % 21 23 189

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures