Sequence Similarity Clusters for the Entities in PDB 1IJS

Entity #1 | Chains: N
DNA (5'-D(*CP*CP*AP*CP*CP*CP*CP*AP*A)-3') dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA (5'-D(*AP*C)-3') dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
PROTEIN (PARVOVIRUS COAT PROTEIN) protein, length: 584 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 24971
95 % 12 13 1206 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 12 13 1233
70 % 12 13 1268
50 % 17 19 1161
40 % 17 19 1173
30 % 17 19 1152

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.