Sequence Similarity Clusters for the Entities in PDB 1IJQ

Entity #1 | Chains: A,B
LOW-DENSITY LIPOPROTEIN RECEPTOR protein, length: 316 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37281
95 % 1 1 29313 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 28285
70 % 1 1 25509
50 % 1 1 21878
40 % 1 1 19311
30 % 2 4 9442

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures