Sequence Similarity Clusters for the Entities in PDB 1IJQ

Entity #1 | Chains: A,B
LOW-DENSITY LIPOPROTEIN RECEPTOR protein, length: 316 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36828
95 % 1 1 28963 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 27953
70 % 1 1 25223
50 % 1 1 21644
40 % 1 1 19111
30 % 2 4 9327

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures