Sequence Similarity Clusters for the Entities in PDB 1IJK

Entity #1 | Chains: A
von Willebrand factor protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 29029
95 % 9 14 3691 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 9 14 3753
70 % 9 15 3450
50 % 9 15 3369
40 % 9 15 3266
30 % 9 15 3066
Entity #2 | Chains: B
Botrocetin protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16430
95 % 2 4 15312 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 4 15031
70 % 2 4 14085
50 % 19 28 1311
40 % 40 60 646
30 % 158 220 107
Entity #3 | Chains: C
Botrocetin protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16490
95 % 2 4 15373 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 4 15091
70 % 2 4 14137
50 % 18 25 1558
40 % 41 60 646
30 % 159 220 107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures