Sequence Similarity Clusters for the Entities in PDB 1IJK

Entity #1 | Chains: A
von Willebrand factor protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28629
95 % 9 14 3651 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 9 14 3703
70 % 9 15 3409
50 % 9 15 3320
40 % 9 15 3225
30 % 9 15 3024
Entity #2 | Chains: B
Botrocetin protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16156
95 % 2 4 15082 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 4 14813
70 % 2 4 13893
50 % 19 28 1297
40 % 40 60 638
30 % 158 220 104
Entity #3 | Chains: C
Botrocetin protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16214
95 % 2 4 15143 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 4 14873
70 % 2 4 13944
50 % 18 25 1535
40 % 41 60 638
30 % 159 220 104

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures