Sequence Similarity Clusters for the Entities in PDB 1IJK

Entity #1 | Chains: A
von Willebrand factor protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28007
95 % 9 14 3552 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 9 14 3606
70 % 9 15 3314
50 % 9 15 3234
40 % 9 15 3145
30 % 9 15 2955
Entity #2 | Chains: B
Botrocetin protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15773
95 % 2 4 14777 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 4 14508
70 % 2 4 13606
50 % 19 28 1268
40 % 40 60 626
30 % 158 220 99
Entity #3 | Chains: C
Botrocetin protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15831
95 % 2 4 14838 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 4 14569
70 % 2 4 13657
50 % 18 25 1501
40 % 41 60 626
30 % 159 220 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.