Sequence Similarity Clusters for the Entities in PDB 1IJK

Entity #1 | Chains: A
von Willebrand factor protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26912
95 % 9 14 3421 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 9 14 3473
70 % 9 15 3190
50 % 9 15 3114
40 % 9 15 3038
30 % 9 15 2846
Entity #2 | Chains: B
Botrocetin protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15150
95 % 2 4 14213 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 4 13949
70 % 2 4 13085
50 % 19 27 1418
40 % 40 58 697
30 % 157 217 100
Entity #3 | Chains: C
Botrocetin protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15205
95 % 2 4 14267 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 2 4 14003
70 % 2 4 13132
50 % 16 21 1982
40 % 41 58 697
30 % 158 217 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.