Sequence Similarity Clusters for the Entities in PDB 1IJD

Entity #1 | Chains: A,C,E
LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31086
95 % 1 1 25724 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 24863
70 % 1 1 22577
50 % 4 4 3680
40 % 4 4 3542
30 % 4 4 3309
Entity #2 | Chains: B,D,F
LIGHT-HARVESTING PROTEIN B-800/820, BETA CHAIN protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31155
95 % 1 1 25792 Flexibility: No
,
PDBFlex
90 % 1 1 24921
70 % 4 4 3797
50 % 4 4 3682
40 % 4 4 3544
30 % 4 4 3311

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures