Sequence Similarity Clusters for the Entities in PDB 1IJD

Entity #1 | Chains: A,C,E
LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29844
95 % 1 1 24749
90 % 1 1 23945
70 % 1 1 21798
50 % 4 4 3528
40 % 4 4 3406
30 % 4 4 3181
Entity #2 | Chains: B,D,F
LIGHT-HARVESTING PROTEIN B-800/820, BETA CHAIN protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29909
95 % 1 1 24814 Flexibility: No
,
PDBFlex
90 % 1 1 24001
70 % 4 4 3626
50 % 4 4 3530
40 % 4 4 3408
30 % 4 4 3183

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.