Sequence Similarity Clusters for the Entities in PDB 1IJD

Entity #1 | Chains: A,C,E
LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28232
95 % 1 1 23386
90 % 1 1 22652
70 % 1 1 20740
50 % 4 4 3357
40 % 4 4 3250
30 % 4 4 3041
Entity #2 | Chains: B,D,F
LIGHT-HARVESTING PROTEIN B-800/820, BETA CHAIN protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28296
95 % 1 1 23450
90 % 1 1 22707
70 % 4 4 3448
50 % 4 4 3359
40 % 4 4 3252
30 % 4 4 3043

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.