Sequence Similarity Clusters for the Entities in PDB 1IJD

Entity #1 | Chains: A,C,E
LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29351
95 % 1 1 24320 Flexibility: No
Max RMSD: 0.0,
PDBFlex
90 % 1 1 23541
70 % 1 1 21518
50 % 4 4 3485
40 % 4 4 3366
30 % 4 4 3138
Entity #2 | Chains: B,D,F
LIGHT-HARVESTING PROTEIN B-800/820, BETA CHAIN protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29415
95 % 1 1 24384
90 % 1 1 23596
70 % 4 4 3574
50 % 4 4 3487
40 % 4 4 3368
30 % 4 4 3140

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.