Sequence Similarity Clusters for the Entities in PDB 1IJD

Entity #1 | Chains: A,C,E
LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30681
95 % 1 1 25391 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 24546
70 % 1 1 22305
50 % 4 4 3627
40 % 4 4 3494
30 % 4 4 3262
Entity #2 | Chains: B,D,F
LIGHT-HARVESTING PROTEIN B-800/820, BETA CHAIN protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30749
95 % 1 1 25458 Flexibility: No
,
PDBFlex
90 % 1 1 24603
70 % 4 4 3736
50 % 4 4 3629
40 % 4 4 3496
30 % 4 4 3264

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures