Sequence Similarity Clusters for the Entities in PDB 1IJD

Entity #1 | Chains: A,C,E
LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30169
95 % 1 1 25008 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 24189
70 % 1 1 21993
50 % 4 4 3561
40 % 4 4 3436
30 % 4 4 3209
Entity #2 | Chains: B,D,F
LIGHT-HARVESTING PROTEIN B-800/820, BETA CHAIN protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30235
95 % 1 1 25074 Flexibility: No
,
PDBFlex
90 % 1 1 24245
70 % 4 4 3663
50 % 4 4 3563
40 % 4 4 3438
30 % 4 4 3211

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.