Sequence Similarity Clusters for the Entities in PDB 1IJ9

Entity #1 | Chains: A
VASCULAR CELL ADHESION PROTEIN 1 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16307
95 % 3 3 15143 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 2.5
PDBFlex
90 % 3 3 14837
70 % 3 3 13886
50 % 3 3 12275
40 % 3 3 11023
30 % 3 3 9376

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures