Sequence Similarity Clusters for the Entities in PDB 1IIL

Entity #1 | Chains: A,B,C,D
HEPARIN-BINDING GROWTH FACTOR 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 1611
95 % 14 20 1716 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 14 20 1749
70 % 14 20 1771
50 % 83 125 158
40 % 84 126 176
30 % 85 127 188
Entity #2 | Chains: E,F,G,H
FIBROBLAST GROWTH FACTOR RECEPTOR 2 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12556
95 % 3 7 3468 Flexibility: Medium
Max RMSD: 13.5, Avg RMSD: 4.2
PDBFlex
90 % 3 7 3519
70 % 5 15 1815
50 % 5 15 1839
40 % 5 15 1848
30 % 5 15 1784

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.