Sequence Similarity Clusters for the Entities in PDB 1IIL

Entity #1 | Chains: A,B,C,D
HEPARIN-BINDING GROWTH FACTOR 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 1662
95 % 14 20 1759 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 14 20 1797
70 % 14 20 1823
50 % 83 125 165
40 % 84 126 181
30 % 85 127 192
Entity #2 | Chains: E,F,G,H
FIBROBLAST GROWTH FACTOR RECEPTOR 2 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12928
95 % 3 7 3568 Flexibility: Medium
Max RMSD: 13.4, Avg RMSD: 4.6
PDBFlex
90 % 3 7 3621
70 % 5 15 1865
50 % 5 15 1899
40 % 5 15 1904
30 % 5 15 1835

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures