Sequence Similarity Clusters for the Entities in PDB 1IIL

Entity #1 | Chains: A,B,C,D
HEPARIN-BINDING GROWTH FACTOR 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 1723
95 % 15 21 1700 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 15 21 1736
70 % 15 21 1753
50 % 84 126 173
40 % 85 127 184
30 % 86 128 197
Entity #2 | Chains: E,F,G,H
FIBROBLAST GROWTH FACTOR RECEPTOR 2 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13371
95 % 3 7 3681 Flexibility: Medium
Max RMSD: 13.4, Avg RMSD: 4.6
PDBFlex
90 % 3 7 3743
70 % 5 16 1879
50 % 5 16 1909
40 % 5 16 1909
30 % 5 16 1839

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures