Sequence Similarity Clusters for the Entities in PDB 1II8

Entity #1 | Chains: A
Rad50 ABC-ATPase protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28977
95 % 3 3 24087 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.7
PDBFlex
90 % 3 3 23265
70 % 3 3 21216
50 % 3 3 18335
40 % 3 3 16327
30 % 3 3 13961
Entity #2 | Chains: B
Rad50 ABC-ATPase protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 29294
95 % 3 3 24316 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.3
PDBFlex
90 % 3 3 23485
70 % 3 3 21395
50 % 3 3 18490
40 % 3 3 16470
30 % 3 3 14081

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures