Sequence Similarity Clusters for the Entities in PDB 1II8

Entity #1 | Chains: A
Rad50 ABC-ATPase protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27784
95 % 3 3 23144 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.7
PDBFlex
90 % 3 3 22386
70 % 3 3 20448
50 % 3 3 17705
40 % 3 3 15784
30 % 3 3 13493
Entity #2 | Chains: B
Rad50 ABC-ATPase protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28093
95 % 3 3 23367 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.3
PDBFlex
90 % 3 3 22600
70 % 3 3 20629
50 % 3 3 17860
40 % 3 3 15924
30 % 3 3 13613

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.