Sequence Similarity Clusters for the Entities in PDB 1II8

Entity #1 | Chains: A
Rad50 ABC-ATPase protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28398
95 % 3 3 23633 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.7
PDBFlex
90 % 3 3 22840
70 % 3 3 20847
50 % 3 3 18042
40 % 3 3 16075
30 % 3 3 13749
Entity #2 | Chains: B
Rad50 ABC-ATPase protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28712
95 % 3 3 23859 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.3
PDBFlex
90 % 3 3 23057
70 % 3 3 21025
50 % 3 3 18195
40 % 3 3 16216
30 % 3 3 13869

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures