Sequence Similarity Clusters for the Entities in PDB 1II4

Entity #1 | Chains: A,B,C,D
HEPARIN-BINDING GROWTH FACTOR 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 1571
95 % 15 20 1669 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 15 20 1702
70 % 15 20 1737
50 % 94 125 158
40 % 95 126 175
30 % 96 127 188
Entity #2 | Chains: E,F,G,H
FIBROBLAST GROWTH FACTOR RECEPTOR 2 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20230
95 % 5 7 3414 Flexibility: Medium
Max RMSD: 13.5, Avg RMSD: 4.2
PDBFlex
90 % 5 7 3464
70 % 8 14 1873
50 % 8 14 1890
40 % 8 14 1895
30 % 8 14 1828

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.