Sequence Similarity Clusters for the Entities in PDB 1II4

Entity #1 | Chains: A,B,C,D
HEPARIN-BINDING GROWTH FACTOR 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 1724
95 % 16 21 1701 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 16 21 1738
70 % 16 21 1755
50 % 95 126 173
40 % 96 127 185
30 % 97 128 198
Entity #2 | Chains: E,F,G,H
FIBROBLAST GROWTH FACTOR RECEPTOR 2 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21937
95 % 5 7 3683 Flexibility: Medium
Max RMSD: 13.4, Avg RMSD: 4.6
PDBFlex
90 % 5 7 3746
70 % 9 16 1880
50 % 9 16 1911
40 % 9 16 1912
30 % 9 16 1842

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures