Sequence Similarity Clusters for the Entities in PDB 1II4

Entity #1 | Chains: A,B,C,D
HEPARIN-BINDING GROWTH FACTOR 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 3951
95 % 16 21 1718 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 16 21 1753
70 % 16 21 1762
50 % 111 142 167
40 % 112 143 179
30 % 113 144 197
Entity #2 | Chains: E,F,G,H
FIBROBLAST GROWTH FACTOR RECEPTOR 2 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19184
95 % 5 7 3814 Flexibility: Medium
Max RMSD: 13.5, Avg RMSD: 3.7
PDBFlex
90 % 5 7 3886
70 % 9 16 1930
50 % 9 16 1963
40 % 9 16 1942
30 % 33 44 681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures