Sequence Similarity Clusters for the Entities in PDB 1II4

Entity #1 | Chains: A,B,C,D
HEPARIN-BINDING GROWTH FACTOR 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 1653
95 % 15 20 1750 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 15 20 1787
70 % 15 20 1813
50 % 94 125 164
40 % 95 126 181
30 % 96 127 192
Entity #2 | Chains: E,F,G,H
FIBROBLAST GROWTH FACTOR RECEPTOR 2 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21074
95 % 5 7 3545 Flexibility: Medium
Max RMSD: 13.4, Avg RMSD: 4.6
PDBFlex
90 % 5 7 3598
70 % 9 15 1855
50 % 9 15 1884
40 % 9 15 1889
30 % 9 15 1824

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.