Sequence Similarity Clusters for the Entities in PDB 1II4

Entity #1 | Chains: A,B,C,D
HEPARIN-BINDING GROWTH FACTOR 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 1693
95 % 15 20 1795 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 15 20 1835
70 % 15 20 1860
50 % 94 125 170
40 % 95 126 184
30 % 96 127 196
Entity #2 | Chains: E,F,G,H
FIBROBLAST GROWTH FACTOR RECEPTOR 2 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21557
95 % 5 7 3635 Flexibility: Medium
Max RMSD: 13.4, Avg RMSD: 4.6
PDBFlex
90 % 5 7 3687
70 % 9 16 1839
50 % 9 16 1877
40 % 9 16 1884
30 % 9 16 1815

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures