Sequence Similarity Clusters for the Entities in PDB 1IHT

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 333 44
95 % 173 334 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 173 334 64
70 % 173 336 77
50 % 173 336 100
40 % 173 336 123
30 % 173 336 134
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 288 55
95 % 189 372 36
90 % 190 379 38
70 % 190 403 45
50 % 190 403 77
40 % 986 1639 4
30 % 1062 1781 6
Entity #3 | Chains: I
HIRUTONIN-6 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.