Sequence Similarity Clusters for the Entities in PDB 1IHS

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 149 333 44
95 % 149 334 60
90 % 149 334 64
70 % 149 336 77
50 % 149 336 100
40 % 149 336 124
30 % 149 336 136
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 130 288 55
95 % 163 372 36 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 164 379 38
70 % 164 403 45
50 % 164 403 78
40 % 941 1679 4
30 % 1005 1827 6
Entity #3 | Chains: I
HIRUTONIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72963
95 % 1 1 50964
90 % 1 1 48389
70 % 1 1 42518
50 % 1 1 36406
40 % 1 1 32166
30 % 1 1 27336

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.