Sequence Similarity Clusters for the Entities in PDB 1IHS

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 338 45
95 % 154 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 154 339 67
70 % 154 341 78
50 % 154 341 109
40 % 154 341 132
30 % 154 341 140
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 290 75
95 % 168 377 52
90 % 169 384 48
70 % 169 408 46
50 % 169 408 84
40 % 1032 1863 4
30 % 1039 1885 6
Entity #3 | Chains: I
HIRUTONIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77394
95 % 1 1 54006
90 % 1 1 51161
70 % 1 1 44756
50 % 1 1 38206
40 % 1 1 33732
30 % 1 1 28671

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures