Sequence Similarity Clusters for the Entities in PDB 1IHS

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 152 334 53
95 % 154 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 154 342 67
70 % 154 342 81
50 % 154 342 112
40 % 154 342 135
30 % 154 342 146
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 150 332 52
95 % 168 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 169 385 56
70 % 169 409 47
50 % 169 409 85
40 % 1039 1885 4
30 % 1045 1899 7
Entity #3 | Chains: I
HIRUTONIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46832
95 % 1 1 48340
90 % 1 1 45902
70 % 1 1 40259
50 % 1 1 34150
40 % 1 1 29906
30 % 1 1 24974

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures