Sequence Similarity Clusters for the Entities in PDB 1IHS

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 338 45
95 % 154 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 154 339 67
70 % 154 341 78
50 % 154 341 107
40 % 154 341 131
30 % 154 341 138
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 290 59
95 % 168 377 40
90 % 169 384 40
70 % 169 408 46
50 % 169 408 84
40 % 969 1721 4
30 % 1033 1871 6
Entity #3 | Chains: I
HIRUTONIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76538
95 % 1 1 53418
90 % 1 1 50623
70 % 1 1 44295
50 % 1 1 37815
40 % 1 1 33382
30 % 1 1 28370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures