Sequence Similarity Clusters for the Entities in PDB 1IHS

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 150 335 45
95 % 150 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 150 336 66
70 % 150 338 78
50 % 150 338 105
40 % 150 338 128
30 % 150 338 137
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 290 57
95 % 164 374 35
90 % 165 381 39
70 % 165 405 45
50 % 165 405 81
40 % 950 1696 4
30 % 1014 1846 6
Entity #3 | Chains: I
HIRUTONIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75138
95 % 1 1 52536
90 % 1 1 49835
70 % 1 1 43634
50 % 1 1 37272
40 % 1 1 32916
30 % 1 1 27985

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.