Sequence Similarity Clusters for the Entities in PDB 1IGY

Entity #1 | Chains: A,C
IGG1 INTACT ANTIBODY MAB61.1.3 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 22214
95 % 8 10 3672 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 53 77 406
70 % 2002 2479 1
50 % 4063 5021 1
40 % 4063 5021 1
30 % 4842 5951 1
Entity #2 | Chains: B,D
IGG1 INTACT ANTIBODY MAB61.1.3 protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34084
95 % 1 1 27460 Flexibility: High
Max RMSD: 18.6, Avg RMSD: 18.6
PDBFlex
90 % 1 1 26519
70 % 3 3 9857
50 % 10 11 3101
40 % 10 17 1535
30 % 10 17 1518

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures