Sequence Similarity Clusters for the Entities in PDB 1IGY

Entity #1 | Chains: A,C
IGG1 INTACT ANTIBODY MAB61.1.3 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 20482
95 % 6 8 4252 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.5
PDBFlex
90 % 48 66 419
70 % 1507 1822 2
50 % 3666 4489 1
40 % 3666 4489 1
30 % 4324 5290 1
Entity #2 | Chains: B,D
IGG1 INTACT ANTIBODY MAB61.1.3 protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31606
95 % 1 1 25528 Flexibility: High
Max RMSD: 18.6, Avg RMSD: 18.6
PDBFlex
90 % 1 1 24696
70 % 3 3 9145
50 % 12 13 2333
40 % 12 19 1310
30 % 12 19 1292

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.