Sequence Similarity Clusters for the Entities in PDB 1IGY

Entity #1 | Chains: A,C
IGG1 INTACT ANTIBODY MAB61.1.3 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21395
95 % 6 8 4460 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 50 73 397
70 % 1896 2346 1
50 % 3848 4752 1
40 % 3848 4752 1
30 % 4554 5606 1
Entity #2 | Chains: B,D
IGG1 INTACT ANTIBODY MAB61.1.3 protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33006
95 % 1 1 26650 Flexibility: High
Max RMSD: 18.6, Avg RMSD: 18.6
PDBFlex
90 % 1 1 25750
70 % 3 3 9540
50 % 10 11 3002
40 % 10 17 1497
30 % 10 17 1471

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.