Sequence Similarity Clusters for the Entities in PDB 1IGY

Entity #1 | Chains: A,C
IGG1 INTACT ANTIBODY MAB61.1.3 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21858
95 % 8 10 3632 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 52 76 399
70 % 1961 2426 1
50 % 3979 4913 1
40 % 3979 4913 1
30 % 4696 5780 1
Entity #2 | Chains: B,D
IGG1 INTACT ANTIBODY MAB61.1.3 protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33627
95 % 1 1 27097 Flexibility: High
Max RMSD: 18.6, Avg RMSD: 18.6
PDBFlex
90 % 1 1 26171
70 % 3 3 9702
50 % 10 11 3064
40 % 10 17 1522
30 % 10 17 1497

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures