Sequence Similarity Clusters for the Entities in PDB 1IGM

Entity #1 | Chains: L
IGM-KAPPA POT FV (LIGHT CHAIN) protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58217
95 % 1 1 40199
90 % 12 20 815
70 % 104 215 66
50 % 154 319 21
40 % 174 363 27
30 % 2850 7240 1
Entity #2 | Chains: H
IGM-KAPPA POT FV (HEAVY CHAIN) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49958
95 % 1 1 41350
90 % 1 1 39387
70 % 210 411 9
50 % 297 613 6
40 % 2333 5806 1
30 % 2851 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures