Sequence Similarity Clusters for the Entities in PDB 1IGJ

Entity #1 | Chains: A,C
IGG2A-KAPPA 26-10 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25818
95 % 79 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 89 162 146
70 % 1049 2519 1
50 % 2147 5107 1
40 % 2470 5756 1
30 % 3012 7175 1
Entity #2 | Chains: B,D
IGG2A-KAPPA 26-10 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29794
95 % 1 2 25993 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 1 2 25083
70 % 1040 2478 2
50 % 2148 5107 1
40 % 2471 5756 1
30 % 3013 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures