Sequence Similarity Clusters for the Entities in PDB 1IGJ

Entity #1 | Chains: A,C
IGG2A-KAPPA 26-10 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27754
95 % 82 146 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 89 156 148
70 % 979 2362 1
50 % 2003 4781 1
40 % 2003 4781 1
30 % 2259 5635 1
Entity #2 | Chains: B,D
IGG2A-KAPPA 26-10 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27802
95 % 1 2 23191 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 1 2 22459
70 % 967 2311 2
50 % 2004 4781 1
40 % 2004 4781 1
30 % 2260 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures