Sequence Similarity Clusters for the Entities in PDB 1IGJ

Entity #1 | Chains: A,C
IGG2A-KAPPA 26-10 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27429
95 % 82 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 89 155 150
70 % 939 2287 1
50 % 1923 4633 1
40 % 1923 4633 1
30 % 2173 5461 1
Entity #2 | Chains: B,D
IGG2A-KAPPA 26-10 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27477
95 % 1 2 22923 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 1 2 22211
70 % 931 2244 2
50 % 1924 4633 1
40 % 1924 4633 1
30 % 2174 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.