Sequence Similarity Clusters for the Entities in PDB 1IGI

Entity #1 | Chains: L
IGG2A-KAPPA 26-10 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28617
95 % 94 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 102 158 148
70 % 1256 2474 1
50 % 2567 5011 1
40 % 2567 5011 1
30 % 2962 5941 1
Entity #2 | Chains: H
IGG2A-KAPPA 26-10 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28664
95 % 2 2 23863 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 2 2 23091
70 % 1245 2424 2
50 % 2568 5011 1
40 % 2568 5011 1
30 % 2963 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures