Sequence Similarity Clusters for the Entities in PDB 1IGI

Entity #1 | Chains: L
IGG2A-KAPPA 26-10 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28214
95 % 94 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 102 156 149
70 % 1221 2416 1
50 % 2495 4892 1
40 % 2495 4892 1
30 % 2844 5759 1
Entity #2 | Chains: H
IGG2A-KAPPA 26-10 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28262
95 % 2 2 23533 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 2 2 22776
70 % 1210 2366 2
50 % 2496 4892 1
40 % 2496 4892 1
30 % 2845 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures