Sequence Similarity Clusters for the Entities in PDB 1IGF

Entity #1 | Chains: L,M
IGG1-KAPPA B13I2 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26991
95 % 109 145 146 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 117 155 148
70 % 1270 2265 1
50 % 2590 4589 1
40 % 2590 4589 1
30 % 2971 5394 1
Entity #2 | Chains: H,J
IGG1-KAPPA B13I2 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26942
95 % 1 2 22472 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 21799
70 % 1256 2223 2
50 % 2591 4589 1
40 % 2591 4589 1
30 % 2972 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.