Sequence Similarity Clusters for the Entities in PDB 1IGF

Entity #1 | Chains: L,M
IGG1-KAPPA B13I2 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28213
95 % 109 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 117 156 149
70 % 1362 2416 1
50 % 2776 4892 1
40 % 2776 4892 1
30 % 3187 5759 1
Entity #2 | Chains: H,J
IGG1-KAPPA B13I2 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28163
95 % 1 2 23468
90 % 1 2 22730
70 % 1344 2366 2
50 % 2777 4892 1
40 % 2777 4892 1
30 % 3188 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures