Sequence Similarity Clusters for the Entities in PDB 1IGF

Entity #1 | Chains: L,M
IGG1-KAPPA B13I2 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28616
95 % 109 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 117 158 148
70 % 1398 2474 1
50 % 2850 5011 1
40 % 2850 5011 1
30 % 3309 5941 1
Entity #2 | Chains: H,J
IGG1-KAPPA B13I2 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28567
95 % 1 2 23800
90 % 1 2 23047
70 % 1380 2424 2
50 % 2851 5011 1
40 % 2851 5011 1
30 % 3310 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures