Sequence Similarity Clusters for the Entities in PDB 1IGC

Entity #1 | Chains: L
IGG1-KAPPA MOPC21 FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62020
95 % 5 10 3623 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 30 76 396
70 % 1072 2416 1
50 % 2188 4892 1
40 % 2188 4892 1
30 % 2464 5759 1
Entity #2 | Chains: H
IGG1-KAPPA MOPC21 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60990
95 % 1 1 42852
90 % 3 9 2792
70 % 1059 2366 2
50 % 2189 4892 1
40 % 2189 4892 1
30 % 2465 5759 1
Entity #3 | Chains: A
STREPTOCOCCAL PROTEIN G (DOMAIN III) protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 6998
95 % 5 13 5072 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 28 66 340
70 % 34 72 354
50 % 34 82 377
40 % 34 82 403
30 % 40 88 368

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures