Sequence Similarity Clusters for the Entities in PDB 1IGC

Entity #1 | Chains: L
IGG1-KAPPA MOPC21 FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58748
95 % 4 8 4252 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.5
PDBFlex
90 % 29 66 419
70 % 805 1822 2
50 % 2001 4489 1
40 % 2001 4489 1
30 % 2250 5290 1
Entity #2 | Chains: H
IGG1-KAPPA MOPC21 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57785
95 % 1 1 40596
90 % 3 9 2617
70 % 970 2172 1
50 % 2002 4489 1
40 % 2002 4489 1
30 % 2251 5290 1
Entity #3 | Chains: A
STREPTOCOCCAL PROTEIN G (DOMAIN III) protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 6557
95 % 5 13 4719 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 28 62 331
70 % 34 68 326
50 % 34 78 333
40 % 34 78 361
30 % 40 84 334

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.