Sequence Similarity Clusters for the Entities in PDB 1IGC

Entity #1 | Chains: L
IGG1-KAPPA MOPC21 FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61167
95 % 4 8 4466 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 29 73 416
70 % 1044 2362 1
50 % 2132 4781 1
40 % 2132 4781 1
30 % 2398 5635 1
Entity #2 | Chains: H
IGG1-KAPPA MOPC21 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60157
95 % 1 1 42307
90 % 3 9 2747
70 % 1031 2311 2
50 % 2133 4781 1
40 % 2133 4781 1
30 % 2399 5635 1
Entity #3 | Chains: A
STREPTOCOCCAL PROTEIN G (DOMAIN III) protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 6887
95 % 5 13 4985 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 28 66 336
70 % 34 72 349
50 % 34 82 374
40 % 34 82 393
30 % 40 88 356

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures