Sequence Similarity Clusters for the Entities in PDB 1IGC

Entity #1 | Chains: L
IGG1-KAPPA MOPC21 FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60387
95 % 4 8 4396 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.5
PDBFlex
90 % 29 69 407
70 % 1002 2287 1
50 % 2049 4633 1
40 % 2049 4633 1
30 % 2309 5461 1
Entity #2 | Chains: H
IGG1-KAPPA MOPC21 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59400
95 % 1 1 41758
90 % 3 9 2695
70 % 994 2244 2
50 % 2050 4633 1
40 % 2050 4633 1
30 % 2310 5461 1
Entity #3 | Chains: A
STREPTOCOCCAL PROTEIN G (DOMAIN III) protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 6789
95 % 5 13 4905 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 28 66 324
70 % 34 72 330
50 % 34 82 346
40 % 34 82 372
30 % 40 88 339

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.