Sequence Similarity Clusters for the Entities in PDB 1IGC

Entity #1 | Chains: L
IGG1-KAPPA MOPC21 FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62825
95 % 5 10 3670 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 31 77 405
70 % 1104 2474 1
50 % 2254 5011 1
40 % 2254 5011 1
30 % 2569 5941 1
Entity #2 | Chains: H
IGG1-KAPPA MOPC21 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61781
95 % 1 1 43376
90 % 3 9 2836
70 % 1091 2424 2
50 % 2255 5011 1
40 % 2255 5011 1
30 % 2570 5941 1
Entity #3 | Chains: A
STREPTOCOCCAL PROTEIN G (DOMAIN III) protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 7105
95 % 5 13 5152 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 28 66 347
70 % 36 74 341
50 % 36 84 379
40 % 36 84 400
30 % 42 90 366

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures