Sequence Similarity Clusters for the Entities in PDB 1IFQ

Entity #1 | Chains: A,B
vesicle trafficking protein Sec22b protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37975
95 % 1 1 35254 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 33689
70 % 1 1 30003
50 % 1 1 25583
40 % 1 1 22457
30 % 1 1 18717

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures