Sequence Similarity Clusters for the Entities in PDB 1IFQ

Entity #1 | Chains: A,B
vesicle trafficking protein Sec22b protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46293
95 % 1 1 34738 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 33164
70 % 1 1 29530
50 % 1 1 25163
40 % 1 1 22146
30 % 1 1 18748

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures