Sequence Similarity Clusters for the Entities in PDB 1IFH

Entity #1 | Chains: L
IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 13398
95 % 5 13 3887 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 49 84 308
70 % 1314 2474 1
50 % 2682 5011 1
40 % 2682 5011 1
30 % 3106 5941 1
Entity #2 | Chains: H
IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 13370
95 % 2 4 12843 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 4 15 2500
70 % 1301 2424 2
50 % 2683 5011 1
40 % 2683 5011 1
30 % 3107 5941 1
Entity #3 | Chains: P
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101-107) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures