Sequence Similarity Clusters for the Entities in PDB 1IFH

Entity #1 | Chains: L
IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 13085
95 % 5 13 3808 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 49 84 301
70 % 1264 2392 1
50 % 2580 4843 1
40 % 2580 4843 1
30 % 2953 5705 1
Entity #2 | Chains: H
IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 13057
95 % 2 4 12558 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 4 15 2431
70 % 1251 2342 2
50 % 2581 4843 1
40 % 2581 4843 1
30 % 2954 5705 1
Entity #3 | Chains: P
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101-107) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures