Sequence Similarity Clusters for the Entities in PDB 1IFH

Entity #1 | Chains: L
IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 14784
95 % 5 13 4025 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 52 91 270
70 % 1338 2538 1
50 % 2739 5152 1
40 % 3134 5806 1
30 % 3849 7240 1
Entity #2 | Chains: H
IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12468
95 % 2 4 11953 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 4 16 2332
70 % 1328 2497 2
50 % 2740 5152 1
40 % 3135 5806 1
30 % 3850 7240 1
Entity #3 | Chains: P
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101-107) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures