Sequence Similarity Clusters for the Entities in PDB 1IFH

Entity #1 | Chains: L
IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12892
95 % 5 13 3746 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 49 83 307
70 % 1221 2327 1
50 % 2494 4713 1
40 % 2494 4713 1
30 % 2860 5567 1
Entity #2 | Chains: H
IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12865
95 % 2 4 12392 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 4 15 2388
70 % 1210 2280 2
50 % 2495 4713 1
40 % 2495 4713 1
30 % 2861 5567 1
Entity #3 | Chains: P
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101-107) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.