Sequence Similarity Clusters for the Entities in PDB 1IEF

Entity #1 | Chains: A,B
CAPSID PROTEIN P40: ASSEMBLIN PROTEASE protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38441
95 % 8 15 1512 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.9
PDBFlex
90 % 8 15 1542
70 % 8 15 1544
50 % 8 15 1598
40 % 8 15 1615
30 % 11 18 1343

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.