Sequence Similarity Clusters for the Entities in PDB 1IDB

Entity #1 | Chains: A,B
HIV-2 PROTEASE protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 1828
95 % 11 19 1302 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 11 19 1330
70 % 12 26 1110
50 % 565 705 5
40 % 575 715 9
30 % 577 717 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures