Sequence Similarity Clusters for the Entities in PDB 1ID5

Entity #1 | Chains: L
THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 1456
95 % 11 17 1965 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 11 17 2014
70 % 11 17 2023
50 % 30 42 840
40 % 30 42 870
30 % 30 42 857
Entity #2 | Chains: H
THROMBIN protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1157
95 % 13 22 1571 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 13 22 1597
70 % 347 405 43
50 % 347 405 78
40 % 1479 1682 4
30 % 1597 1831 6
Entity #3 | Chains: I
ECOTIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 22316
95 % 12 18 1949 Flexibility: Low
Max RMSD: 9.8, Avg RMSD: 1.7
PDBFlex
90 % 12 18 1998
70 % 12 19 1680
50 % 12 19 1722
40 % 12 19 1734
30 % 12 19 1684

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.