Sequence Similarity Clusters for the Entities in PDB 1ID5

Entity #1 | Chains: L
THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 1773
95 % 11 17 2082 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 11 17 2135
70 % 11 17 2144
50 % 30 42 886
40 % 30 42 911
30 % 30 42 899
Entity #2 | Chains: H
THROMBIN protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1429
95 % 13 22 1686 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 13 22 1725
70 % 349 409 47
50 % 349 409 85
40 % 1632 1873 4
30 % 1641 1887 7
Entity #3 | Chains: I
ECOTIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 19957
95 % 12 18 2068 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 12 18 2127
70 % 12 19 1829
50 % 12 19 1844
40 % 12 19 1826
30 % 12 19 1772

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures