Sequence Similarity Clusters for the Entities in PDB 1ID5

Entity #1 | Chains: L
THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 1423
95 % 11 17 1924 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.8
PDBFlex
90 % 11 17 1974
70 % 11 17 1989
50 % 30 42 822
40 % 30 42 857
30 % 30 42 838
Entity #2 | Chains: H
THROMBIN protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1121
95 % 13 22 1526 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 13 22 1553
70 % 344 403 45
50 % 344 403 78
40 % 1470 1674 4
30 % 1588 1822 6
Entity #3 | Chains: I
ECOTIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 22056
95 % 12 18 1907 Flexibility: Low
Max RMSD: 9.8, Avg RMSD: 1.6
PDBFlex
90 % 12 18 1957
70 % 12 19 1651
50 % 12 19 1696
40 % 12 19 1712
30 % 12 19 1663

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.