Sequence Similarity Clusters for the Entities in PDB 1ID5

Entity #1 | Chains: L
THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 1503
95 % 11 17 2017 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 11 17 2063
70 % 11 17 2072
50 % 30 42 857
40 % 30 42 887
30 % 30 42 872
Entity #2 | Chains: H
THROMBIN protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1207
95 % 13 22 1615 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 13 22 1645
70 % 347 405 46
50 % 347 405 84
40 % 1492 1698 4
30 % 1611 1848 6
Entity #3 | Chains: I
ECOTIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 23002
95 % 12 18 2001 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 12 18 2047
70 % 12 19 1728
50 % 12 19 1775
40 % 12 19 1783
30 % 12 19 1729

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures