Sequence Similarity Clusters for the Entities in PDB 1ID5

Entity #1 | Chains: L
THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 1474
95 % 11 17 1989 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 11 17 2036
70 % 11 17 2042
50 % 30 42 847
40 % 30 42 878
30 % 30 42 864
Entity #2 | Chains: H
THROMBIN protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1177
95 % 13 22 1597 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 13 22 1625
70 % 347 405 45
50 % 347 405 80
40 % 1482 1685 4
30 % 1600 1834 6
Entity #3 | Chains: I
ECOTIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 22716
95 % 12 18 1973 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 12 18 2020
70 % 12 19 1706
50 % 12 19 1748
40 % 12 19 1756
30 % 12 19 1708

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.