Sequence Similarity Clusters for the Entities in PDB 1ID3

Entity #1 | Chains: I,J
PALINDROMIC 146BP DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43043
95 % 2 3 12396
90 % 119 152 78
70 % 120 153 96
50 % 122 156 131
40 % 122 156 145
30 % 122 156 160
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 13289
95 % 3 4 6982
90 % 128 164 74
70 % 128 164 87
50 % 128 164 122
40 % 128 164 139
30 % 128 164 155
Entity #4 | Chains: C,G
HISTONE H2A.1 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 10171
95 % 4 5 6136
90 % 4 5 6118
70 % 115 153 88
50 % 124 163 117
40 % 124 163 138
30 % 124 163 150
Entity #5 | Chains: D,H
HISTONE H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 22122
95 % 3 4 10194
90 % 3 4 10056
70 % 113 146 104
50 % 113 146 140
40 % 113 146 155
30 % 113 146 172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.