Sequence Similarity Clusters for the Entities in PDB 1ID3

Entity #1 | Chains: I,J
PALINDROMIC 146BP DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44939
95 % 2 3 13002 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 125 161 76
70 % 126 162 89
50 % 128 165 125
40 % 128 165 143
30 % 128 165 157
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13952
95 % 3 4 7357 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.5
PDBFlex
90 % 134 173 72
70 % 134 173 84
50 % 134 173 117
40 % 134 173 139
30 % 134 173 147
Entity #4 | Chains: C,G
HISTONE H2A.1 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 10668
95 % 4 5 6462 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 4 5 6443
70 % 121 162 87
50 % 130 172 110
40 % 130 172 134
30 % 130 172 143
Entity #5 | Chains: D,H
HISTONE H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23192
95 % 3 4 10692 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 4 10546
70 % 119 156 97
50 % 119 156 134
40 % 119 156 149
30 % 119 156 162

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.