Sequence Similarity Clusters for the Entities in PDB 1ID3

Entity #1 | Chains: I,J
PALINDROMIC 146BP DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46489
95 % 2 3 13474 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 128 169 80
70 % 129 170 94
50 % 131 174 124
40 % 131 174 144
30 % 131 174 151
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14501
95 % 3 4 7618 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.5
PDBFlex
90 % 137 183 70
70 % 137 183 86
50 % 137 183 115
40 % 137 183 139
30 % 137 183 144
Entity #4 | Chains: C,G
HISTONE H2A.1 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11103
95 % 4 5 6683 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 4 5 6677
70 % 124 175 89
50 % 133 185 108
40 % 133 185 130
30 % 133 185 139
Entity #5 | Chains: D,H
HISTONE H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24099
95 % 3 4 11091 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 4 10940
70 % 122 167 99
50 % 122 167 136
40 % 122 167 149
30 % 122 167 159

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures