Sequence Similarity Clusters for the Entities in PDB 1ID3

Entity #1 | Chains: I,J
PALINDROMIC 146BP DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44368
95 % 2 3 12807
90 % 120 154 78
70 % 121 155 93
50 % 123 158 128
40 % 123 158 145
30 % 123 158 160
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 13731
95 % 3 4 7250
90 % 129 166 73
70 % 129 166 86
50 % 129 166 122
40 % 129 166 140
30 % 129 166 154
Entity #4 | Chains: C,G
HISTONE H2A.1 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 10505
95 % 4 5 6367
90 % 4 5 6347
70 % 116 155 89
50 % 125 165 116
40 % 125 165 138
30 % 125 165 150
Entity #5 | Chains: D,H
HISTONE H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 22896
95 % 3 4 10542
90 % 3 4 10407
70 % 114 148 100
50 % 114 148 139
40 % 114 148 156
30 % 114 148 172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.