Sequence Similarity Clusters for the Entities in PDB 1ID3

Entity #1 | Chains: I,J
PALINDROMIC 146BP DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21461
95 % 2 3 13026 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 128 171 79
70 % 129 172 95
50 % 131 176 124
40 % 131 176 145
30 % 131 176 158
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 7211
95 % 3 4 7311 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.5
PDBFlex
90 % 137 185 71
70 % 137 185 89
50 % 137 185 118
40 % 137 185 141
30 % 137 185 151
Entity #4 | Chains: C,G
HISTONE H2A.1 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21335
95 % 4 5 6729 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 4 5 6718
70 % 124 177 90
50 % 133 187 109
40 % 133 187 133
30 % 133 187 144
Entity #5 | Chains: D,H
HISTONE H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20933
95 % 3 4 11065 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 4 10907
70 % 122 169 100
50 % 122 169 135
40 % 122 169 151
30 % 122 169 167

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures