Sequence Similarity Clusters for the Entities in PDB 1ID3

Entity #1 | Chains: I,J
PALINDROMIC 146BP DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20713
95 % 2 3 12574 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 127 167 78
70 % 128 168 95
50 % 130 172 124
40 % 130 172 143
30 % 130 172 158
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 7088
95 % 3 4 7183 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.5
PDBFlex
90 % 136 181 68
70 % 136 181 84
50 % 136 181 113
40 % 136 181 138
30 % 136 181 149
Entity #4 | Chains: C,G
HISTONE H2A.1 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20585
95 % 4 5 6518 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 4 5 6492
70 % 123 170 86
50 % 132 180 112
40 % 132 180 136
30 % 132 180 147
Entity #5 | Chains: D,H
HISTONE H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20201
95 % 3 4 10684 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 4 10526
70 % 121 165 96
50 % 121 165 133
40 % 121 165 150
30 % 121 165 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures